RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 NOSTRINQ8IVI9 506 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 PI4KBQ9UBF8 816 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 ISY1Q9ULR0 285 aaKnown RBP15.93■□□□□ 0.14
PTPRF-202ENST00000372405 COL2A1P02458 1487 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-202ENST00000372405 ENTPD3O75355 529 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 GOLGA8HP0CJ92 632 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 XRCC6P12956 609 aaKnown RBP eCLIP15.93■□□□□ 0.14
PTPRF-202ENST00000372405 ANO1Q5XXA6 986 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 LRSAM1Q6UWE0 723 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 METTL16Q86W50 562 aaKnown RBP15.93■□□□□ 0.14
PTPRF-202ENST00000372405 AGBL3Q8NEM8 1001 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 PIBF1Q8WXW3 757 aa15.93■□□□□ 0.14
PTPRF-202ENST00000372405 FOXP1Q9H334 677 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-202ENST00000372405 SHTN1A0MZ66 631 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 CLRN2A0PK11 232 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 GOLGA6L4A6NEF3 574 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 YEATS4O95619 227 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 SCG2P13521 617 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 TOB1P50616 345 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-202ENST00000372405 EIF6P56537 245 aaKnown RBP15.92■□□□□ 0.14
PTPRF-202ENST00000372405 RASSF7Q02833 373 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 GNL2Q13823 731 aaKnown RBP15.92■□□□□ 0.14
PTPRF-202ENST00000372405 PFKFB3Q16875 520 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-202ENST00000372405 ZSCAN29Q8IWY8 852 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-202ENST00000372405 GRPEL1Q9HAV7 217 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 PCDHA7Q9UN72 937 aa15.92■□□□□ 0.14
PTPRF-202ENST00000372405 DLGAP5Q15398 846 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 TATDN1Q6P1N9 297 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 USP17L2Q6R6M4 530 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 OGFOD1Q8N543 542 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 CPVLQ9H3G5 476 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 ZNF70Q9UC06 446 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-202ENST00000372405 HDAC9Q9UKV0 1011 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 LTBP3Q9NS15 1303 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 USP17L5A8MUK1 530 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 ADAMTS3O15072 1205 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 NR1I2O75469 434 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 PTPAQ15257 358 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 SAFBQ15424 915 aaKnown RBP eCLIP15.91■□□□□ 0.14
PTPRF-202ENST00000372405 SF3A1Q15459 793 aaKnown RBP15.91■□□□□ 0.14
PTPRF-202ENST00000372405 CIAPIN1Q6FI81 312 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 LRRC47Q8N1G4 583 aaKnown RBP15.91■□□□□ 0.14
PTPRF-202ENST00000372405 MTMR14Q8NCE2 650 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 BICD2Q8TD16 824 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 ZBED3Q96IU2 234 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-202ENST00000372405 GOLPH3LQ9H4A5 285 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 DACT1Q9NYF0 836 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 CNTNAP1P78357 1384 aa15.91■□□□□ 0.14
PTPRF-202ENST00000372405 FAM205CA6NFA0 338 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 TCP10L2B9ZVM9 353 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 KLRF2D3W0D1 207 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 TTLL1O95922 423 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 PDHBP11177 359 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 ME1P48163 572 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 GNAQP50148 359 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 STK38Q15208 465 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 SPDYE2Q495Y8 402 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 EARS2Q5JPH6 523 aaKnown RBP15.9■□□□□ 0.14
PTPRF-202ENST00000372405 L1TD1Q5T7N2 865 aaKnown RBP15.9■□□□□ 0.14
PTPRF-202ENST00000372405 JDP2Q8WYK2 163 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 CLIP2Q9UDT6 1046 aa15.9■□□□□ 0.14
PTPRF-202ENST00000372405 SPTLC2O15270 562 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 PARP1P09874 1014 aaKnown RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 SNHG28P0DPA3 235 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 XBP1P17861 261 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 MRE11P49959 708 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 SLC39A14Q15043 492 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 TYW1BQ6NUM6 668 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 FOXP4Q8IVH2 680 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 KCNG4Q8TDN1 519 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 TNFRSF25Q93038 417 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 CCDC17Q96LX7 622 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 MPHOSPH10O00566 681 aaKnown RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 JAG1P78504 1218 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 RRP1BQ14684 758 aaKnown RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 CERKLQ49MI3 558 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 NOM1Q5C9Z4 860 aaKnown RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 AXDND1Q5T1B0 1012 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 CCAR1Q8IX12 1150 aaKnown RBP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 GPKOWQ92917 476 aaPredicted RBP eCLIP15.89■□□□□ 0.13
PTPRF-202ENST00000372405 SPZ1Q9BXG8 430 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 PANK2Q9BZ23 570 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 RBSNQ9H1K0 784 aa15.89■□□□□ 0.13
PTPRF-202ENST00000372405 KRT2P35908 639 aa15.88■□□□□ 0.13
PTPRF-202ENST00000372405 SNW1Q13573 536 aaKnown RBP15.88■□□□□ 0.13
PTPRF-202ENST00000372405 ADALQ6DHV7 355 aa15.88■□□□□ 0.13
PTPRF-202ENST00000372405 CDAN1Q8IWY9 1227 aa15.88■□□□□ 0.13
PTPRF-202ENST00000372405 CSRNP1Q96S65 589 aa15.88■□□□□ 0.13
PTPRF-202ENST00000372405 LZTS2Q9BRK4 669 aa15.88■□□□□ 0.13
PTPRF-202ENST00000372405 WNT10BO00744 389 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 EGFRP00533 1210 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 NBPF9Q3BBW0 867 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 SIAH1Q8IUQ4 282 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 ENGASEQ8NFI3 743 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 FAM151AQ8WW52 585 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 FUCA2Q9BTY2 467 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 TMOD2Q9NZR1 351 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 FRMPD2Q68DX3 1309 aaPredicted RBP15.87■□□□□ 0.13
PTPRF-202ENST00000372405 A0A1W2PQ27 194 aa15.87■□□□□ 0.13
PTPRF-202ENST00000372405 A0A1W2PQ64 194 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms