RNA–Protein interactions for RNA: ENST00000368021.7

USF1-203, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-203ENST00000368021 DEFB129Q9H1M3 183 aa14.02□□□□□ -0.16
USF1-203ENST00000368021 ORC3Q9UBD5 711 aaPredicted RBP14.02□□□□□ -0.16
USF1-203ENST00000368021 ZNF70Q9UC06 446 aaPredicted RBP14.02□□□□□ -0.16
USF1-203ENST00000368021 ABT1Q9ULW3 272 aaKnown RBP14.02□□□□□ -0.16
USF1-203ENST00000368021 PITPNM2Q9BZ72 1349 aa14.02□□□□□ -0.17
USF1-203ENST00000368021 DDTLA6NHG4 134 aaPredicted RBP14.01□□□□□ -0.17
USF1-203ENST00000368021 H3BQV1 296 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 SHMT1P34896 483 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 IFFO2Q5TF58 517 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 FOXD4L5Q5VV16 416 aaPredicted RBP14.01□□□□□ -0.17
USF1-203ENST00000368021 SH3BP5LQ7L8J4 393 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 CCDC144CPQ8IYA2 1237 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 NUP133Q8WUM0 1156 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 FOXD4L4Q8WXT5 416 aaPredicted RBP14.01□□□□□ -0.17
USF1-203ENST00000368021 CDCA5Q96FF9 252 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 CCDC17Q96LX7 622 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 KAT14Q9H8E8 782 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 FMNL1O95466 1100 aaPredicted RBP14.01□□□□□ -0.17
USF1-203ENST00000368021 PRKG1Q13976 671 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 FAM83AQ86UY5 434 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 APOBEC3FQ8IUX4 373 aaKnown RBP14.01□□□□□ -0.17
USF1-203ENST00000368021 PNMA1Q8ND90 353 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 CREBZFQ9NS37 354 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 FZD1Q9UP38 647 aa14.01□□□□□ -0.17
USF1-203ENST00000368021 GREB1LQ9C091 1923 aaPredicted RBP14□□□□□ -0.17
USF1-203ENST00000368021 SSRP1Q08945 709 aaKnown RBP14□□□□□ -0.17
USF1-203ENST00000368021 RASA3Q14644 834 aa14□□□□□ -0.17
USF1-203ENST00000368021 PPP4R3BQ5MIZ7 849 aa14□□□□□ -0.17
USF1-203ENST00000368021 ZSCAN29Q8IWY8 852 aaPredicted RBP14□□□□□ -0.17
USF1-203ENST00000368021 TRIM22Q8IYM9 498 aa14□□□□□ -0.17
USF1-203ENST00000368021 CRACR2BQ8N4Y2 399 aaPredicted RBP14□□□□□ -0.17
USF1-203ENST00000368021 CTCFLQ8NI51 663 aaPredicted RBP14□□□□□ -0.17
USF1-203ENST00000368021 FAM151AQ8WW52 585 aa14□□□□□ -0.17
USF1-203ENST00000368021 WASF1Q92558 559 aa14□□□□□ -0.17
USF1-203ENST00000368021 ZSCAN16Q9H4T2 348 aaPredicted RBP14□□□□□ -0.17
USF1-203ENST00000368021 DNAJC18Q9H819 358 aa14□□□□□ -0.17
USF1-203ENST00000368021 STX8Q9UNK0 236 aa14□□□□□ -0.17
USF1-203ENST00000368021 IGKV6D-41A0A0C4DH26 115 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 KIF5BP33176 963 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 GRM1Q13255 1194 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 TATDN1Q6P1N9 297 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 NBPF11Q86T75 865 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 FBXO18Q8NFZ0 1043 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 CEP95Q96GE4 821 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 C8orf76Q96K31 380 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.99□□□□□ -0.17
USF1-203ENST00000368021 MTMR4Q9NYA4 1195 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 HERC5Q9UII4 1024 aaKnown RBP13.99□□□□□ -0.17
USF1-203ENST00000368021 TOP1P11387 765 aaKnown RBP13.99□□□□□ -0.17
USF1-203ENST00000368021 AKR1B1P15121 316 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 MCTP1Q6DN14 999 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 PAXIP1Q6ZW49 1069 aaPredicted RBP13.99□□□□□ -0.17
USF1-203ENST00000368021 MOB2Q70IA6 237 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 CDAN1Q8IWY9 1227 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 PHKBQ93100 1093 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 CSRNP1Q96S65 589 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 TMEM47Q9BQJ4 181 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 RNF26Q9BY78 433 aaPredicted RBP13.99□□□□□ -0.17
USF1-203ENST00000368021 TRIM34Q9BYJ4 488 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 TMEM39BQ9GZU3 492 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 CNTNAP1P78357 1384 aa13.99□□□□□ -0.17
USF1-203ENST00000368021 PPFIA3O75145 1194 aa13.98□□□□□ -0.17
USF1-203ENST00000368021 DEXIO95424 95 aa13.98□□□□□ -0.17
USF1-203ENST00000368021 FUT2Q10981 343 aa13.98□□□□□ -0.17
USF1-203ENST00000368021 TTLL12Q14166 644 aaPredicted RBP13.98□□□□□ -0.17
USF1-203ENST00000368021 TMTC3Q6ZXV5 915 aa13.98□□□□□ -0.17
USF1-203ENST00000368021 SLC26A6Q9BXS9 759 aa13.98□□□□□ -0.17
USF1-203ENST00000368021 GBA2Q9HCG7 927 aaPredicted RBP13.98□□□□□ -0.17
USF1-203ENST00000368021 TCHHQ07283 1943 aa13.98□□□□□ -0.17
USF1-203ENST00000368021 TTLL1O95922 423 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 GNAQP50148 359 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 TNFAIP1Q13829 316 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 NBPF12Q5TAG4 269 aaPredicted RBP13.97□□□□□ -0.17
USF1-203ENST00000368021 SAPCD2Q86UD0 394 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 C2orf69Q8N8R5 385 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 ALG1Q9BT22 464 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 TNNI2P48788 182 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 HUNKP57058 714 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 RESTQ13127 1097 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 GRM4Q14833 912 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 CERKLQ49MI3 558 aaPredicted RBP13.97□□□□□ -0.17
USF1-203ENST00000368021 FERMT3Q86UX7 667 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 DNAJC5GQ8N7S2 189 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 TMEM87AQ8NBN3 555 aa13.97□□□□□ -0.17
USF1-203ENST00000368021 MYH6P13533 1939 aa13.96□□□□□ -0.17
USF1-203ENST00000368021 PRPF3O43395 683 aaKnown RBP13.96□□□□□ -0.17
USF1-203ENST00000368021 TBC1D12O60347 775 aa13.96□□□□□ -0.17
USF1-203ENST00000368021 NF2P35240 595 aa13.96□□□□□ -0.17
USF1-203ENST00000368021 SKOR2Q2VWA4 1001 aaPredicted RBP13.96□□□□□ -0.17
USF1-203ENST00000368021 DEFB115Q30KQ5 88 aa13.96□□□□□ -0.17
USF1-203ENST00000368021 SMAP1Q8IYB5 467 aaPredicted RBP13.96□□□□□ -0.17
USF1-203ENST00000368021 LZTS2Q9BRK4 669 aa13.96□□□□□ -0.17
USF1-203ENST00000368021 LMBRD1Q9NUN5 540 aa13.96□□□□□ -0.17
USF1-203ENST00000368021 RBM27Q9P2N5 1060 aaKnown RBP13.96□□□□□ -0.17
USF1-203ENST00000368021 PLEKHA8P1O95397 391 aa13.95□□□□□ -0.18
USF1-203ENST00000368021 KRT85P78386 507 aa13.95□□□□□ -0.18
USF1-203ENST00000368021 AKAP17AQ02040 695 aaKnown RBP13.95□□□□□ -0.18
USF1-203ENST00000368021 TMEM179Q6ZVK1 233 aa13.95□□□□□ -0.18
USF1-203ENST00000368021 MAD2L2Q9UI95 211 aa13.95□□□□□ -0.18
USF1-203ENST00000368021 TLL2Q9Y6L7 1015 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 137.6 ms