RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 ZNF408Q9H9D4 720 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 RPAP1Q9BWH6 1393 aaPredicted RBP10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 PSDA5PKW4 1024 aaPredicted RBP10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 TMEM232C9JQI7 657 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 SLC39A14Q15043 492 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 ZNF827Q17R98 1081 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 WWC2Q6AWC2 1192 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 CCDC112Q8NEF3 446 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 PIGSQ96S52 555 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 TMX1Q9H3N1 280 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 RCOR1Q9UKL0 485 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 A0A0U1RQG5 324 aaPredicted RBP10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 CCP110O43303 1012 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 TBCAO75347 108 aaKnown RBP10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 TTLL1O95922 423 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 MMP1P03956 469 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 ZFYVE27Q5T4F4 411 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 PGBD1Q96JS3 809 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 CMA1P23946 247 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 MATR3P43243 847 aaKnown RBP eCLIP10.51□□□□□ -0.732e-8■■■□□ 15.9
TMEM39A-201ENST00000319172 MYL5Q02045 173 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 COA7Q96BR5 231 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 CCDC17Q96LX7 622 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 PIM2Q9P1W9 311 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 LRWD1Q9UFC0 647 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 POSTNQ15063 836 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 PTPN14Q15678 1187 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 ARHGAP29Q52LW3 1261 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 NSMFQ6X4W1 530 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 DGKHQ86XP1 1220 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 TRMT44Q8IYL2 757 aaKnown RBP10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 RTKN2Q8IZC4 609 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 FERMT2Q96AC1 680 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 TMEM47Q9BQJ4 181 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 PI4KBQ9UBF8 816 aa10.51□□□□□ -0.73
TMEM39A-201ENST00000319172 SKILP12757 684 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 CDC25AP30304 524 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 NF2P35240 595 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 GSDMDP57764 484 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 CACNA2D4Q7Z3S7 1137 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 PSTPIP2Q9H939 334 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 KIAA1468Q9P260 1216 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 PCDHA1Q9Y5I3 950 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 NEMFO60524 1076 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 CCT6AP40227 531 aaKnown RBP10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 RAD51AP2Q09MP3 1159 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 SLC15A2Q16348 729 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 CALCRLQ16602 461 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 FOXP1Q9H334 677 aaPredicted RBP10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 BCL2L12Q9HB09 334 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 POLR3EQ9NVU0 708 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 PCDHB6Q9Y5E3 794 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 RBM10P98175 930 aaKnown RBP10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 TNFAIP1Q13829 316 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 TDRD7Q8NHU6 1098 aaKnown RBP10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 CAGE1Q8TC20 777 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 SNX29Q8TEQ0 813 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 CEP95Q96GE4 821 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 SEPT11Q9NVA2 429 aaKnown RBP10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 POLLQ9UGP5 575 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 SWAP70Q9UH65 585 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 DAGLAQ9Y4D2 1042 aa10.5□□□□□ -0.73
TMEM39A-201ENST00000319172 KIF20AO95235 890 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 GUCY1A2P33402 732 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 PLCD1P51178 756 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 TMTC3Q6ZXV5 915 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 IGDCC4Q8TDY8 1250 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 ZKSCAN5Q9Y2L8 839 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 PRPF3O43395 683 aaKnown RBP10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 TECP42680 631 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 C12orf60Q5U649 245 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 ADGRA1Q86SQ6 560 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 CLEC10AQ8IUN9 316 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 LRRC27Q9C0I9 530 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 TAOK3Q9H2K8 898 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 KANSL2Q9H9L4 492 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 PPP1R12BO60237 982 aaPredicted RBP10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 FGFR1OPO95684 399 aaKnown RBP10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 CIAPIN1Q6FI81 312 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 DYMQ7RTS9 669 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 SGMS1Q86VZ5 419 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 SYCP3Q8IZU3 236 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 VGLL2Q8N8G2 317 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 OXER1Q8TDS5 423 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 CSRNP2Q9H175 543 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 ALDH8A1Q9H2A2 487 aaPredicted RBP10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 DHX36Q9H2U1 1008 aaKnown RBP10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 ZNF142P52746 1687 aaPredicted RBP10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 TNNT1P13805 278 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 DDR1Q08345 913 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 SV2BQ7L1I2 683 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 KIAA1328Q86T90 577 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 MMRN2Q9H8L6 949 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 GOPCQ9HD26 462 aa10.49□□□□□ -0.73
TMEM39A-201ENST00000319172 DDX39AO00148 427 aaKnown RBP10.48□□□□□ -0.73
TMEM39A-201ENST00000319172 GH2P01242 217 aa10.48□□□□□ -0.73
TMEM39A-201ENST00000319172 ERCC3P19447 782 aa10.48□□□□□ -0.73
TMEM39A-201ENST00000319172 PDE4DQ08499 809 aa10.48□□□□□ -0.73
TMEM39A-201ENST00000319172 R3HDM1Q15032 1099 aaKnown RBP10.48□□□□□ -0.73
TMEM39A-201ENST00000319172 ODF2Q5BJF6 829 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms