RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LETM2Q2VYF4 491 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 KRT40Q6A162 431 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 ADALQ6DHV7 355 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 MYL10Q9BUA6 226 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 HGSO14964 777 aaPredicted RBP12.77□□□□□ -0.37
VPS39-201ENST00000318006 CEP104O60308 925 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 GJC1P36383 396 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 MRPL12P52815 198 aaKnown RBP12.77□□□□□ -0.37
VPS39-201ENST00000318006 HNRNPH2P55795 449 aaKnown RBP12.77□□□□□ -0.37
VPS39-201ENST00000318006 CCDC62Q6P9F0 684 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 CCDC170Q8IYT3 715 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 PHKBQ93100 1093 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 PPP1R13BQ96KQ4 1090 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 ZSWIM6Q9HCJ5 1215 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 MTMR6Q9Y217 621 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 E9PCH4 1651 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 PLCD1P51178 756 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 SH2D4BQ5SQS7 431 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 CEP120Q8N960 986 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 PLIN2Q99541 437 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 DESI2Q9BSY9 194 aa12.77□□□□□ -0.37
VPS39-201ENST00000318006 RNF17Q9BXT8 1623 aaKnown RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 RNF40O75150 1001 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 SEC31AO94979 1220 aaKnown RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 ATP1A2P50993 1020 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 APBA1Q02410 837 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 SRGAP1Q7Z6B7 1085 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 BICD1Q96G01 975 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 TRIM31Q9BZY9 425 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 NPHP4O75161 1426 aaPredicted RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 CASQ2O14958 399 aaPredicted RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 AKNAD1Q5T1N1 836 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 PIK3AP1Q6ZUJ8 805 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 ZNF365Q70YC5 407 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 PSMB7Q99436 277 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 NAP1L4Q99733 375 aaKnown RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 MAP3K4Q9Y6R4 1608 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 RPS8P62241 208 aaKnown RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 VPS52Q8N1B4 723 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 RAB3IPQ96QF0 476 aaPredicted RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 MPHOSPH6Q99547 160 aaKnown RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 STK38LQ9Y2H1 464 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 TRAF5O00463 557 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 MUM1Q2TAK8 710 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 LRRC24Q50LG9 513 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 HS2ST1Q7LGA3 356 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 ZNF274Q96GC6 653 aaPredicted RBP12.76□□□□□ -0.37
VPS39-201ENST00000318006 CDC23Q9UJX2 597 aa12.76□□□□□ -0.37
VPS39-201ENST00000318006 CTNNA1P35221 906 aaKnown RBP12.75□□□□□ -0.37
VPS39-201ENST00000318006 PSMC4P43686 418 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 PDE4DQ08499 809 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 MAP7Q14244 749 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 CFAP157Q5JU67 520 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 TRIM58Q8NG06 486 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 JDP2Q8WYK2 163 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 NRBP1Q9UHY1 535 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 RPL13P26373 211 aaKnown RBP12.75□□□□□ -0.37
VPS39-201ENST00000318006 DDX23Q9BUQ8 820 aaKnown RBP12.75□□□□□ -0.37
VPS39-201ENST00000318006 HSPD1P10809 573 aaKnown RBP12.75□□□□□ -0.37
VPS39-201ENST00000318006 RPS6KA1Q15418 735 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 CNNM4Q6P4Q7 775 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 TRMT44Q8IYL2 757 aaKnown RBP12.75□□□□□ -0.37
VPS39-201ENST00000318006 CCDC24Q8N4L8 307 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 CARD10Q9BWT7 1032 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 CSRNP2Q9H175 543 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 PHLPP2Q6ZVD8 1323 aa12.75□□□□□ -0.37
VPS39-201ENST00000318006 CETN3O15182 167 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 STX10O60499 249 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 PPARDQ03181 441 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 TTC38Q5R3I4 469 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 ICE2Q659A1 982 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 SV2BQ7L1I2 683 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 IQCDQ96DY2 449 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 HAUS4Q9H6D7 363 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 GPCPD1Q9NPB8 672 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 ODF2LQ9ULJ1 636 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 COMMD10Q9Y6G5 202 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 CCDC151A5D8V7 595 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 TPD52P55327 224 aaPredicted RBP12.74□□□□□ -0.37
VPS39-201ENST00000318006 CLUL1Q15846 466 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 ASIC2Q16515 512 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 RPUSD2Q8IZ73 545 aaKnown RBP12.74□□□□□ -0.37
VPS39-201ENST00000318006 OR8K1Q8NGG5 319 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 CACTINQ8WUQ7 758 aaKnown RBP12.74□□□□□ -0.37
VPS39-201ENST00000318006 IFIH1Q9BYX4 1025 aaKnown RBP12.74□□□□□ -0.37
VPS39-201ENST00000318006 SYNCQ9H7C4 482 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 MAPK8IP1Q9UQF2 711 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 MAST3O60307 1309 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 ERBB3P21860 1342 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 FAM13AO94988 1023 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 CLCN6P51797 869 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 DENND2CQ68D51 928 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 TRIM68Q6AZZ1 485 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 PHLDB3Q6NSJ2 640 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 SPTLC3Q9NUV7 552 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 TPCN1Q9ULQ1 816 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 FAN1Q9Y2M0 1017 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 MAP3K15Q6ZN16 1313 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 UBL4BQ8N7F7 174 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms