RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SMCR8Q8TEV9 937 aaPredicted RBP15.47■□□□□ 0.07
CLK3-224ENST00000568605 ZNF296Q8WUU4 475 aaPredicted RBP15.47■□□□□ 0.07
CLK3-224ENST00000568605 RUFY2Q8WXA3 655 aa15.47■□□□□ 0.07
CLK3-224ENST00000568605 ERO1AQ96HE7 468 aa15.47■□□□□ 0.07
CLK3-224ENST00000568605 ARHGEF10LQ9HCE6 1279 aa15.47■□□□□ 0.07
CLK3-224ENST00000568605 PLXNB2O15031 1838 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 TLR2O60603 784 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 EVX2Q03828 476 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 ICA1Q05084 483 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 MOGSQ13724 837 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 ARHGEF6Q15052 776 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 USP17L2Q6R6M4 530 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 TNS4Q8IZW8 715 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 MYH6P13533 1939 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 DOCK3Q8IZD9 2030 aa15.46■□□□□ 0.07
CLK3-224ENST00000568605 AKR1B1P15121 316 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 OSBPP22059 807 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 JAG1P78504 1218 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 SP3Q02447 781 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 KIF22Q14807 665 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 SEPT2Q15019 361 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 ALX1Q15699 326 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 SHROOM1Q2M3G4 852 aaPredicted RBP15.45■□□□□ 0.06
CLK3-224ENST00000568605 GPAT2Q6NUI2 795 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 ZNF589Q86UQ0 364 aaPredicted RBP15.45■□□□□ 0.06
CLK3-224ENST00000568605 ZNF444Q8N0Y2 327 aaPredicted RBP15.45■□□□□ 0.06
CLK3-224ENST00000568605 KIAA1683Q9H0B3 1180 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 PLIN4Q96Q06 1357 aa15.45■□□□□ 0.06
CLK3-224ENST00000568605 RBBP6Q7Z6E9 1792 aaKnown RBP15.44■□□□□ 0.06
CLK3-224ENST00000568605 HSPD1P10809 573 aaKnown RBP15.44■□□□□ 0.06
CLK3-224ENST00000568605 IRX3P78415 501 aaPredicted RBP15.44■□□□□ 0.06
CLK3-224ENST00000568605 VPS53Q5VIR6 699 aa15.44■□□□□ 0.06
CLK3-224ENST00000568605 CTU1Q7Z7A3 348 aaKnown RBP15.44■□□□□ 0.06
CLK3-224ENST00000568605 STK11IPQ8N1F8 1099 aa15.44■□□□□ 0.06
CLK3-224ENST00000568605 C12orf42Q96LP6 360 aa15.44■□□□□ 0.06
CLK3-224ENST00000568605 KANSL2Q9H9L4 492 aa15.44■□□□□ 0.06
CLK3-224ENST00000568605 ADGRA2Q96PE1 1338 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 RASA1P20936 1047 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 DGKZQ13574 1117 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 ZYXQ15942 572 aaKnown RBP15.43■□□□□ 0.06
CLK3-224ENST00000568605 PPP4R3BQ5MIZ7 849 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 TREML2Q5T2D2 321 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 R3HDMLQ9H3Y0 253 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 PPP4R2Q9NY27 417 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 ANAPC4Q9UJX5 808 aa15.43■□□□□ 0.06
CLK3-224ENST00000568605 SMIM22K7EJ46 135 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 FOXP2O15409 715 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 TSPY3P0CV98 308 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 TSPY8P0CW00 308 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 CYP2C8P10632 490 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 PCP11498 1178 aaKnown RBP15.42■□□□□ 0.06
CLK3-224ENST00000568605 GUCY1A2P33402 732 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 GCLCP48506 637 aaPredicted RBP15.42■□□□□ 0.06
CLK3-224ENST00000568605 PKN2Q16513 984 aaKnown RBP15.42■□□□□ 0.06
CLK3-224ENST00000568605 BMP2KLQ5H9B9 411 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 GTF3C2Q8WUA4 911 aaPredicted RBP15.42■□□□□ 0.06
CLK3-224ENST00000568605 LPAR1Q92633 364 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 DSCC1Q9BVC3 393 aa15.42■□□□□ 0.06
CLK3-224ENST00000568605 ZNFX1Q9P2E3 1918 aaKnown RBP15.42■□□□□ 0.06
CLK3-224ENST00000568605 PRDM1O75626 825 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 FGAP02671 866 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 HOXA7P31268 230 aaPredicted RBP15.41■□□□□ 0.06
CLK3-224ENST00000568605 ATP2B2Q01814 1243 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 RNF41Q9H4P4 317 aaPredicted RBP15.41■□□□□ 0.06
CLK3-224ENST00000568605 GOPCQ9HD26 462 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 TOMM22Q9NS69 142 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 CPA4Q9UI42 421 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 CTNNA3Q9UI47 895 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 PLXNA1Q9UIW2 1896 aa15.41■□□□□ 0.06
CLK3-224ENST00000568605 TSPY2A6NKD2 308 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L15C9J2P7 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L13C9JLJ4 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L11C9JVI0 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L18D6R9N7 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L22D6RA61 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L17D6RBQ6 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L19D6RCP7 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L20D6RJB6 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 GNRH1P01148 92 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 VCAM1P19320 739 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 CHMLP26374 656 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 NT5C2P49902 561 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 LACTBP83111 547 aaPredicted RBP15.4■□□□□ 0.06
CLK3-224ENST00000568605 USP17L24Q0WX57 530 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 IMMTQ16891 758 aaKnown RBP15.4■□□□□ 0.06
CLK3-224ENST00000568605 CASC1Q6TDU7 716 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 C17orf99Q6UX52 265 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 CD99L2Q8TCZ2 262 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 ACER1Q8TDN7 264 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 ASCC2Q9H1I8 757 aaPredicted RBP15.4■□□□□ 0.06
CLK3-224ENST00000568605 EMILIN3Q9NT22 766 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 TMX2Q9Y320 296 aa15.4■□□□□ 0.06
CLK3-224ENST00000568605 ZNF236Q9UL36 1845 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 ZNF213O14771 459 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 WDR46O15213 610 aaKnown RBP15.39■□□□□ 0.05
CLK3-224ENST00000568605 BCRP11274 1271 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 EEF2P13639 858 aaKnown RBP15.39■□□□□ 0.05
CLK3-224ENST00000568605 CTDSPL2Q05D32 466 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 FAM110CQ1W6H9 321 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 CLEC10AQ8IUN9 316 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms