RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PANK2Q9BZ23 570 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 GJA3Q9Y6H8 435 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 FLT1P17948 1338 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 TSPY3P0CV98 308 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 TSPY8P0CW00 308 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 ME1P48163 572 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 TFAP4Q01664 338 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 EVX2Q03828 476 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 TROAPQ12815 778 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 STK38Q15208 465 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 SF3A1Q15459 793 aaKnown RBP19.48■□□□□ 0.71
LDLR-206ENST00000557958 NBPF11Q86T75 865 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 OGFOD1Q8N543 542 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 KAT14Q9H8E8 782 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 FER1L6Q2WGJ9 1857 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 U2AF2P26368 475 aaKnown RBP eCLIP19.47■□□□□ 0.71
LDLR-206ENST00000557958 EIF6P56537 245 aaKnown RBP19.47■□□□□ 0.71
LDLR-206ENST00000557958 TNIP1Q15025 636 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 CFAP100Q494V2 611 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 APOBEC3HQ6NTF7 200 aaKnown RBP19.47■□□□□ 0.71
LDLR-206ENST00000557958 CDC42EP5Q6NZY7 148 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 CCDC73Q6ZRK6 1079 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 PGBD1Q96JS3 809 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 AIFM3Q96NN9 605 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 RBSNQ9H1K0 784 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 TCP11L1Q9NUJ3 509 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 HDAC9Q9UKV0 1011 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 MYO3BQ8WXR4 1341 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 LTBP3Q9NS15 1303 aa19.47■□□□□ 0.71
LDLR-206ENST00000557958 YBX3P16989 372 aaKnown RBP eCLIP19.46■□□□□ 0.71
LDLR-206ENST00000557958 CACNB3P54284 484 aa19.46■□□□□ 0.71
LDLR-206ENST00000557958 MAP3K11Q16584 847 aa19.46■□□□□ 0.71
LDLR-206ENST00000557958 ZDHHC15Q96MV8 337 aa19.46■□□□□ 0.71
LDLR-206ENST00000557958 MAP3K14Q99558 947 aa19.46■□□□□ 0.71
LDLR-206ENST00000557958 DACT1Q9NYF0 836 aa19.46■□□□□ 0.71
LDLR-206ENST00000557958 SERPINA10Q9UK55 444 aa19.46■□□□□ 0.71
LDLR-206ENST00000557958 MMP1P03956 469 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 LIG1P18858 919 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 C16orf86Q6ZW13 317 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 JMYQ8N9B5 988 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 ANKS1AQ92625 1134 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 TNMDQ9H2S6 317 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 KIF28PB7ZC32 967 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 PRPF3O43395 683 aaKnown RBP19.45■□□□□ 0.7
LDLR-206ENST00000557958 CCDC173Q0VFZ6 552 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 ANO1Q5XXA6 986 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 LINC00301Q8NCQ3 95 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 DYNLL2Q96FJ2 89 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 FOXP1Q9H334 677 aaPredicted RBP19.45■□□□□ 0.7
LDLR-206ENST00000557958 TDRD3Q9H7E2 651 aaKnown RBP19.45■□□□□ 0.7
LDLR-206ENST00000557958 GJB4Q9NTQ9 266 aa19.45■□□□□ 0.7
LDLR-206ENST00000557958 CCDC192P0DO97 292 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 HDLBPQ00341 1268 aaKnown RBP19.44■□□□□ 0.7
LDLR-206ENST00000557958 GPR162Q16538 588 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 TMTC3Q6ZXV5 915 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 CCDC82Q8N4S0 544 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 MRIQ9BWK5 157 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 FTOQ9C0B1 505 aaKnown RBP eCLIP19.44■□□□□ 0.7
LDLR-206ENST00000557958 CLSTN2Q9H4D0 955 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 UTRNP46939 3433 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 DDX60LQ5H9U9 1706 aaKnown RBP19.44■□□□□ 0.7
LDLR-206ENST00000557958 ECM29Q5VYK3 1845 aa19.44■□□□□ 0.7
LDLR-206ENST00000557958 A0A1W2PQ27 194 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 A0A1W2PQ64 194 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 A0A1W2PQD8 194 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 SPTLC2O15270 562 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 NMT2O60551 498 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 LMNB1P20700 586 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 GNAQP50148 359 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 PLCD1P51178 756 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 TCP10Q12799 353 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 DLGAP5Q15398 846 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 RBM26Q5T8P6 1007 aaKnown RBP19.43■□□□□ 0.7
LDLR-206ENST00000557958 ADALQ6DHV7 355 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 NOSTRINQ8IVI9 506 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 CCAR1Q8IX12 1150 aaKnown RBP19.43■□□□□ 0.7
LDLR-206ENST00000557958 AGBL3Q8NEM8 1001 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 PRMT6Q96LA8 375 aaPredicted RBP19.43■□□□□ 0.7
LDLR-206ENST00000557958 CTAGE5O15320 804 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 GMLQ99445 158 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.43■□□□□ 0.7
LDLR-206ENST00000557958 BRMS1Q9HCU9 246 aa19.43■□□□□ 0.7
LDLR-206ENST00000557958 DDX4Q9NQI0 724 aaKnown RBP19.43■□□□□ 0.7
LDLR-206ENST00000557958 SHTN1A0MZ66 631 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 RASA1P20936 1047 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 CDK8P49336 464 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 NFIAQ12857 509 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 RCSD1Q6JBY9 416 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 DIS3L2Q8IYB7 885 aaKnown RBP19.42■□□□□ 0.7
LDLR-206ENST00000557958 ADAMTSL1Q8N6G6 1762 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 PNMA1Q8ND90 353 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 MRPS27Q92552 414 aaKnown RBP19.42■□□□□ 0.7
LDLR-206ENST00000557958 TAOK2Q9UL54 1235 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 CLIC4Q9Y696 253 aa19.42■□□□□ 0.7
LDLR-206ENST00000557958 FZD9O00144 591 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 KINO60870 393 aaKnown RBP19.41■□□□□ 0.7
LDLR-206ENST00000557958 NR1I2O75469 434 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 WDHD1O75717 1129 aaPredicted RBP19.41■□□□□ 0.7
LDLR-206ENST00000557958 GUCY1A2P33402 732 aa19.41■□□□□ 0.7
LDLR-206ENST00000557958 FAM160A1Q05DH4 1040 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms