RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 TSPY8P0CW00 308 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 SLC27A3Q5K4L6 730 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 WASF1Q92558 559 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 NOL10Q9BSC4 688 aaKnown RBP12.76□□□□□ -0.37
CUX1-212ENST00000547394 BRWD3Q6RI45 1802 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 RGL2O15211 777 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 CACNB3P54284 484 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 SLC35G1Q2M3R5 365 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 DNTTIP2Q5QJE6 756 aaKnown RBP12.75□□□□□ -0.37
CUX1-212ENST00000547394 FILIP1Q7Z7B0 1213 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 FOXP4Q8IVH2 680 aaPredicted RBP12.75□□□□□ -0.37
CUX1-212ENST00000547394 PNMA1Q8ND90 353 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 STAMQ92783 540 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 KAT14Q9H8E8 782 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 DBNDD1Q9H9R9 158 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 KCNH3Q9ULD8 1083 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 UBR3Q6ZT12 1888 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 CNTNAP5Q8WYK1 1306 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 POLR2DO15514 142 aaKnown RBP12.75□□□□□ -0.37
CUX1-212ENST00000547394 ORC4O43929 436 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 FGRP09769 529 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 PRR29P0C7W0 189 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 PIK3AP1Q6ZUJ8 805 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 CERS5Q8N5B7 392 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 UBE2Q2Q8WVN8 375 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 EPSTI1Q96J88 318 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 VAT1LQ9HCJ6 419 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 ANO10Q9NW15 660 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 CTAGE5O15320 804 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 BAG3O95817 575 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 ATP2B4P23634 1241 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 CDC25AP30304 524 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 KIAA2012Q0VF49 1180 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 METTL16Q86W50 562 aaKnown RBP12.75□□□□□ -0.37
CUX1-212ENST00000547394 KRI1Q8N9T8 703 aaKnown RBP12.75□□□□□ -0.37
CUX1-212ENST00000547394 RNF26Q9BY78 433 aaPredicted RBP12.75□□□□□ -0.37
CUX1-212ENST00000547394 CSRNP2Q9H175 543 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 CLIP2Q9UDT6 1046 aa12.75□□□□□ -0.37
CUX1-212ENST00000547394 LMOD1P29536 600 aaPredicted RBP12.74□□□□□ -0.37
CUX1-212ENST00000547394 NPY5RQ15761 445 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 TYW1BQ6NUM6 668 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 HOMER1Q86YM7 354 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 CEP57L1Q8IYX8 460 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 ZNF444Q8N0Y2 327 aaPredicted RBP12.74□□□□□ -0.37
CUX1-212ENST00000547394 CNNM3Q8NE01 707 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 PDGFDQ9GZP0 370 aaPredicted RBP12.74□□□□□ -0.37
CUX1-212ENST00000547394 FBXO2Q9UK22 296 aaPredicted RBP12.74□□□□□ -0.37
CUX1-212ENST00000547394 CHRNA5P30532 468 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 NLRP5P59047 1200 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 RESP18Q5W5W9 173 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 SERTAD1Q9UHV2 236 aa12.74□□□□□ -0.37
CUX1-212ENST00000547394 FLT1P17948 1338 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 FAM196BA6NMK8 535 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 ZNF500O60304 480 aaPredicted RBP12.73□□□□□ -0.37
CUX1-212ENST00000547394 COBLO75128 1261 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 BBOX1O75936 387 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 ATP1A3P13637 1013 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 RASA1P20936 1047 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 KRT2P35908 639 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 PHF20Q9BVI0 1012 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 FOXP1Q9H334 677 aaPredicted RBP12.73□□□□□ -0.37
CUX1-212ENST00000547394 PDS5AQ29RF7 1337 aaKnown RBP12.73□□□□□ -0.37
CUX1-212ENST00000547394 A0A087X0B3 334 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 PRPF3O43395 683 aaKnown RBP12.73□□□□□ -0.37
CUX1-212ENST00000547394 PPP6R2O75170 966 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 SRGNP10124 158 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 MCM7P33993 719 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 RHBDL3P58872 404 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 SHROOM1Q2M3G4 852 aaPredicted RBP12.73□□□□□ -0.37
CUX1-212ENST00000547394 SBK1Q52WX2 424 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 USP17L2Q6R6M4 530 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 PLA2G4DQ86XP0 818 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 JMYQ8N9B5 988 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 HPSEQ9Y251 543 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 DAGLAQ9Y4D2 1042 aa12.73□□□□□ -0.37
CUX1-212ENST00000547394 OFD1O75665 1012 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 IL1R1P14778 569 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 AFMP43652 599 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 CDK8P49336 464 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 DHX58Q96C10 678 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 TMEM47Q9BQJ4 181 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 ZC3H12CQ9C0D7 883 aaKnown RBP12.72□□□□□ -0.37
CUX1-212ENST00000547394 DDX4Q9NQI0 724 aaKnown RBP12.72□□□□□ -0.37
CUX1-212ENST00000547394 TTF2Q9UNY4 1162 aaKnown RBP12.72□□□□□ -0.37
CUX1-212ENST00000547394 PCDHA5Q9Y5H7 936 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 FAM205AQ6ZU69 1335 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 VWA3AA6NCI4 1184 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 G3V3G9 751 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 CYTH3O43739 400 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 GSTO1P78417 241 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 RILPL1Q5EBL4 403 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 DCAF8Q5TAQ9 597 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 DPP8Q6V1X1 898 aaPredicted RBP12.72□□□□□ -0.37
CUX1-212ENST00000547394 HEATR3Q7Z4Q2 680 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 TSC1Q92574 1164 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 EYA3Q99504 573 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 NID2Q14112 1375 aa12.72□□□□□ -0.37
CUX1-212ENST00000547394 RAD21O60216 631 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 DDAH1O94760 285 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 SMC2O95347 1197 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms