RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 MYBPC3Q14896 1274 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 PSMD6Q15008 389 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 SIL1Q9H173 461 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 DSEQ9UL01 958 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 BARX2Q9UMQ3 279 aaPredicted RBP9.98□□□□□ -0.81
VPS13D-212ENST00000543766 KDM1AO60341 852 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 RTN3O95197 1032 aaPredicted RBP9.97□□□□□ -0.81
VPS13D-212ENST00000543766 IVLP07476 585 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 PDAP1Q13442 181 aaKnown RBP9.97□□□□□ -0.81
VPS13D-212ENST00000543766 CFAP70Q5T0N1 1121 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 TAOK1Q7L7X3 1001 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 SPIRE2Q8WWL2 714 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 MCM8Q9UJA3 840 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 GTF3C4Q9UKN8 822 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 ASAP1Q9ULH1 1129 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 MYOM2P54296 1465 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 A6NCN8 305 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 PFDN1O60925 122 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 HSPA8P11142 646 aaKnown RBP9.97□□□□□ -0.81
VPS13D-212ENST00000543766 HDAC4P56524 1084 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 ICA1Q05084 483 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 POTEEQ6S8J3 1075 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 LRRC43Q8N309 656 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 APPBP2Q92624 585 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 NR1H4Q96RI1 486 aaPredicted RBP9.97□□□□□ -0.81
VPS13D-212ENST00000543766 MLH3Q9UHC1 1453 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 ATP8B1O43520 1251 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 DDX5P17844 614 aaKnown RBP9.97□□□□□ -0.81
VPS13D-212ENST00000543766 RARSP54136 660 aaKnown RBP9.97□□□□□ -0.81
VPS13D-212ENST00000543766 POSTNQ15063 836 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 CCDC30Q5VVM6 783 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 CEP135Q66GS9 1140 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 SLC30A9Q6PML9 568 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 FBXO18Q8NFZ0 1043 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 CORO1BQ9BR76 489 aa9.97□□□□□ -0.81
VPS13D-212ENST00000543766 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.97□□□□□ -0.81
VPS13D-212ENST00000543766 MYO3AQ8NEV4 1616 aa9.96□□□□□ -0.81
VPS13D-212ENST00000543766 RIMS1Q86UR5 1692 aaKnown RBP9.96□□□□□ -0.81
VPS13D-212ENST00000543766 PRKAR2BP31323 418 aa9.96□□□□□ -0.81
VPS13D-212ENST00000543766 MUM1Q2TAK8 710 aa9.96□□□□□ -0.81
VPS13D-212ENST00000543766 SH2D4BQ5SQS7 431 aa9.96□□□□□ -0.81
VPS13D-212ENST00000543766 THOC7Q6I9Y2 204 aaKnown RBP9.96□□□□□ -0.81
VPS13D-212ENST00000543766 TMCO3Q6UWJ1 677 aa9.96□□□□□ -0.81
VPS13D-212ENST00000543766 KRT27Q7Z3Y8 459 aa9.96□□□□□ -0.81
VPS13D-212ENST00000543766 MKL2Q9ULH7 1088 aa9.96□□□□□ -0.81
VPS13D-212ENST00000543766 DDHD2O94830 711 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 SLC16A2P36021 539 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 PPM1FP49593 454 aaPredicted RBP9.96□□□□□ -0.82
VPS13D-212ENST00000543766 CSE1LP55060 971 aaKnown RBP9.96□□□□□ -0.82
VPS13D-212ENST00000543766 INAQ16352 499 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 PKN1Q16512 942 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 CHPFQ8IZ52 775 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 SCG3Q8WXD2 468 aaKnown RBP9.96□□□□□ -0.82
VPS13D-212ENST00000543766 ATP6V0A1Q93050 837 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 TBCBQ99426 244 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 TTF2Q9UNY4 1162 aaKnown RBP9.96□□□□□ -0.82
VPS13D-212ENST00000543766 TRPC6Q9Y210 931 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 KIF1BO60333 1816 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 FUT4P22083 530 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 MLLT1Q03111 559 aaPredicted RBP9.96□□□□□ -0.82
VPS13D-212ENST00000543766 SCRN1Q12765 414 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 NAA30Q147X3 362 aaPredicted RBP9.96□□□□□ -0.82
VPS13D-212ENST00000543766 LRRC41Q15345 812 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 TXNDC2Q86VQ3 553 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 ERC1Q8IUD2 1116 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 TBC1D20Q96BZ9 403 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 HAUS7Q99871 368 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 ZDHHC9Q9Y397 364 aa9.96□□□□□ -0.82
VPS13D-212ENST00000543766 CCDC85CA6NKD9 419 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 H0YC42 278 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 ACSL4O60488 711 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 KIF5BP33176 963 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 ASIC2Q16515 512 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 C21orf62-AS1Q17RA5 79 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 LUZP1Q86V48 1076 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 RHBDL2Q9NX52 303 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 POGZQ7Z3K3 1410 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 KRT14P02533 472 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 NKX1-1Q15270 411 aaPredicted RBP9.95□□□□□ -0.82
VPS13D-212ENST00000543766 MAATS1Q7Z4T9 603 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 PPFIBP1Q86W92 1011 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 KIAA1524Q8TCG1 905 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 CCSER2Q9H7U1 834 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 NSFL1CQ9UNZ2 370 aaKnown RBP9.95□□□□□ -0.82
VPS13D-212ENST00000543766 TNNQ9UQP3 1299 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 CCDC159P0C7I6 412 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 ZFXP17010 805 aaPredicted RBP9.95□□□□□ -0.82
VPS13D-212ENST00000543766 TAF12Q16514 161 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 EXOC4Q96A65 974 aa9.95□□□□□ -0.82
VPS13D-212ENST00000543766 NAP1L3Q99457 506 aaPredicted RBP9.95□□□□□ -0.82
VPS13D-212ENST00000543766 TACO1Q9BSH4 297 aaKnown RBP9.95□□□□□ -0.82
VPS13D-212ENST00000543766 NRXN1Q9ULB1 1477 aa9.94□□□□□ -0.82
VPS13D-212ENST00000543766 HNRNPH1P31943 449 aaKnown RBP9.94□□□□□ -0.82
VPS13D-212ENST00000543766 CHKAP35790 457 aa9.94□□□□□ -0.82
VPS13D-212ENST00000543766 RALGDSQ12967 914 aa9.94□□□□□ -0.82
VPS13D-212ENST00000543766 PAK2Q13177 524 aa9.94□□□□□ -0.82
VPS13D-212ENST00000543766 PDIA5Q14554 519 aa9.94□□□□□ -0.82
VPS13D-212ENST00000543766 TRIM68Q6AZZ1 485 aa9.94□□□□□ -0.82
VPS13D-212ENST00000543766 MCTP1Q6DN14 999 aa9.94□□□□□ -0.82
VPS13D-212ENST00000543766 LILRB1Q8NHL6 650 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms