RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 SHMT1P34896 483 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 PLCD1P51178 756 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 PDE3AQ14432 1141 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 POTEEQ6S8J3 1075 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 CCAR1Q8IX12 1150 aaKnown RBP17.14■□□□□ 0.33
SNHG1-213ENST00000540725 SIRT2Q8IXJ6 389 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 DIS3LQ8TF46 1054 aaKnown RBP17.14■□□□□ 0.33
SNHG1-213ENST00000540725 DNAJC2Q99543 621 aaKnown RBP17.14■□□□□ 0.33
SNHG1-213ENST00000540725 CRNKL1Q9BZJ0 848 aaKnown RBP17.14■□□□□ 0.33
SNHG1-213ENST00000540725 PORCNQ9H237 461 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 CABP5Q9NP86 173 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 ZBTB40Q9NUA8 1239 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 RBM27Q9P2N5 1060 aaKnown RBP17.14■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L15C9J2P7 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L13C9JLJ4 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L11C9JVI0 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L18D6R9N7 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L22D6RA61 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L17D6RBQ6 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L19D6RCP7 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L20D6RJB6 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 POLR3DP05423 398 aaPredicted RBP17.13■□□□□ 0.33
SNHG1-213ENST00000540725 XRCC5P13010 732 aaKnown RBP17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP14P54578 494 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 USP17L24Q0WX57 530 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 NECAB2Q7Z6G3 386 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 ANKLE1Q8NAG6 615 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 ACER1Q8TDN7 264 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 KIAA1683Q9H0B3 1180 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 BCL11AQ9H165 835 aa17.13■□□□□ 0.33
SNHG1-213ENST00000540725 ZNF532Q9HCE3 1301 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 PRKAR2AP13861 404 aaKnown RBP17.12■□□□□ 0.33
SNHG1-213ENST00000540725 VCAM1P19320 739 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 GABPAQ06546 454 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 MAP3K21Q5TCX8 1036 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 GPR142Q7Z601 462 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 PLEKHH3Q7Z736 793 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 USP6NLQ92738 828 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 PRO3102Q9H379 93 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 MCM9Q9NXL9 1143 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 RABGAP1Q9Y3P9 1069 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 FRMPD3Q5JV73 1810 aa17.12■□□□□ 0.33
SNHG1-213ENST00000540725 TCRBV5S4A2TA0A5A2 114 aa17.11■□□□□ 0.33
SNHG1-213ENST00000540725 RAB11FIP3O75154 756 aa17.11■□□□□ 0.33
SNHG1-213ENST00000540725 ZKSCAN1P17029 563 aaPredicted RBP17.11■□□□□ 0.33
SNHG1-213ENST00000540725 GUCY1A2P33402 732 aa17.11■□□□□ 0.33
SNHG1-213ENST00000540725 EVX2Q03828 476 aa17.11■□□□□ 0.33
SNHG1-213ENST00000540725 MORN1Q5T089 497 aa17.11■□□□□ 0.33
SNHG1-213ENST00000540725 CATSPERGQ6ZRH7 1159 aa17.11■□□□□ 0.33
SNHG1-213ENST00000540725 TRMT44Q8IYL2 757 aaKnown RBP17.11■□□□□ 0.33
SNHG1-213ENST00000540725 LCORLQ8N3X6 602 aa17.11■□□□□ 0.33
SNHG1-213ENST00000540725 EDC3Q96F86 508 aaKnown RBP17.11■□□□□ 0.33
SNHG1-213ENST00000540725 CWC22Q9HCG8 908 aaKnown RBP17.11■□□□□ 0.33
SNHG1-213ENST00000540725 CNMDO75829 334 aa17.1■□□□□ 0.33
SNHG1-213ENST00000540725 RGS2P41220 211 aa17.1■□□□□ 0.33
SNHG1-213ENST00000540725 SEPT2Q15019 361 aa17.1■□□□□ 0.33
SNHG1-213ENST00000540725 SDR42E1Q8WUS8 393 aa17.1■□□□□ 0.33
SNHG1-213ENST00000540725 APBA2Q99767 749 aa17.1■□□□□ 0.33
SNHG1-213ENST00000540725 DCP1AQ9NPI6 582 aaPredicted RBP17.1■□□□□ 0.33
SNHG1-213ENST00000540725 RLFQ13129 1914 aa17.1■□□□□ 0.33
SNHG1-213ENST00000540725 CCNA1P78396 465 aa17.09■□□□□ 0.33
SNHG1-213ENST00000540725 CCL14Q16627 93 aa17.09■□□□□ 0.33
SNHG1-213ENST00000540725 NBPF3Q9H094 633 aa17.09■□□□□ 0.33
SNHG1-213ENST00000540725 CHMP4BQ9H444 224 aaKnown RBP17.09■□□□□ 0.33
SNHG1-213ENST00000540725 PAG1Q9NWQ8 432 aa17.09■□□□□ 0.33
SNHG1-213ENST00000540725 OGDHLQ9ULD0 1010 aa17.09■□□□□ 0.33
SNHG1-213ENST00000540725 MPHOSPH10O00566 681 aaKnown RBP17.08■□□□□ 0.32
SNHG1-213ENST00000540725 GLRX3O76003 335 aaKnown RBP17.08■□□□□ 0.32
SNHG1-213ENST00000540725 CYP2D6P10635 497 aa17.08■□□□□ 0.32
SNHG1-213ENST00000540725 MNX1P50219 401 aaPredicted RBP17.08■□□□□ 0.32
SNHG1-213ENST00000540725 CACNB2Q08289 660 aaPredicted RBP17.08■□□□□ 0.32
SNHG1-213ENST00000540725 MAP2K5Q13163 448 aa17.08■□□□□ 0.32
SNHG1-213ENST00000540725 LBX2Q6XYB7 198 aa17.08■□□□□ 0.32
SNHG1-213ENST00000540725 BOLA2Q9H3K6 86 aa17.08■□□□□ 0.32
SNHG1-213ENST00000540725 RPAP3Q9H6T3 665 aaPredicted RBP17.08■□□□□ 0.32
SNHG1-213ENST00000540725 ARMT1Q9H993 441 aa17.08■□□□□ 0.32
SNHG1-213ENST00000540725 RCAN3Q9UKA8 241 aa17.08■□□□□ 0.32
SNHG1-213ENST00000540725 PARP14Q460N5 1801 aa17.08■□□□□ 0.32
SNHG1-213ENST00000540725 LAMA3Q16787 3333 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 A0A0G2JMZ2 1700 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 SPDYE16A6NNV3 312 aaPredicted RBP17.07■□□□□ 0.32
SNHG1-213ENST00000540725 ATP5JP18859 108 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 ADD2P35612 726 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 WDR78Q5VTH9 848 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 SLC44A5Q8NCS7 719 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 C11orf49Q9H6J7 331 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 BTBD7Q9P203 1132 aa17.07■□□□□ 0.32
SNHG1-213ENST00000540725 A0A1W2PRG0 241 aa17.06■□□□□ 0.32
SNHG1-213ENST00000540725 MBD4O95243 580 aa17.06■□□□□ 0.32
SNHG1-213ENST00000540725 SLFNL1Q499Z3 407 aa17.06■□□□□ 0.32
SNHG1-213ENST00000540725 C7orf61Q8IZ16 206 aa17.06■□□□□ 0.32
SNHG1-213ENST00000540725 HAUS7Q99871 368 aa17.06■□□□□ 0.32
SNHG1-213ENST00000540725 SWAP70Q9UH65 585 aa17.06■□□□□ 0.32
SNHG1-213ENST00000540725 A0A1W2PPC1 479 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 SLC15A5A6NIM6 579 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 PRKAB2O43741 272 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 PTPREP23469 700 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 CCND3P30281 292 aaPredicted RBP17.05■□□□□ 0.32
SNHG1-213ENST00000540725 TMEM179Q6ZVK1 233 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 DYNLL2Q96FJ2 89 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms