RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ST14Q9Y5Y6 855 aa6.09□□□□□ -1.43
USP48-215ENST00000534705 PRR33A8MZF0 331 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 SLITRK5O94991 958 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 LRRC14Q15048 493 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 UBE3DQ7Z6J8 389 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 MFSD2AQ8NA29 543 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 BAHD1Q8TBE0 780 aaPredicted RBP6.08□□□□□ -1.44
USP48-215ENST00000534705 UBE2FQ969M7 185 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 TMEM59LQ9UK28 342 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 CAPN6Q9Y6Q1 641 aa6.08□□□□□ -1.44
USP48-215ENST00000534705 SORBS3O60504 671 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 HPXP02790 462 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 CELA3AP09093 270 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 CYP7A1P22680 504 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 RPS26P62854 115 aaKnown RBP6.07□□□□□ -1.44
USP48-215ENST00000534705 ZNF326Q5BKZ1 582 aaKnown RBP6.07□□□□□ -1.44
USP48-215ENST00000534705 TMPRSS7Q7RTY8 843 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 NOC4LQ9BVI4 516 aaKnown RBP6.07□□□□□ -1.44
USP48-215ENST00000534705 RNF19AQ9NV58 838 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 ZSWIM5Q9P217 1185 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 CYP8B1Q9UNU6 501 aa6.07□□□□□ -1.44
USP48-215ENST00000534705 SEMA7AO75326 666 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 FBXO24O75426 580 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 PAGE1O75459 146 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 RLBP1P12271 317 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 BMP6P22004 513 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 KIR3DL1P43629 444 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 NFIXQ14938 502 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 ZNF385BQ569K4 471 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 TCERG1LQ5VWI1 586 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 PCNX4Q63HM2 1172 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 LLGL2Q6P1M3 1020 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 IRF2BP1Q8IU81 584 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 TMEM151BQ8IW70 566 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 GIPC2Q8TF65 315 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 ELMO3Q96BJ8 720 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 MRS2Q9HD23 443 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 USP31Q70CQ4 1352 aa6.06□□□□□ -1.44
USP48-215ENST00000534705 A0A0G2JLL6 359 aaPredicted RBP6.05□□□□□ -1.44
USP48-215ENST00000534705 PEX10O60683 326 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 CTSHP09668 335 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 HK2P52789 917 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 TRIM26Q12899 539 aaPredicted RBP6.05□□□□□ -1.44
USP48-215ENST00000534705 CCDC85BQ15834 202 aaPredicted RBP6.05□□□□□ -1.44
USP48-215ENST00000534705 BORCS6Q96GS4 357 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 KCNC2Q96PR1 638 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 MIPEPQ99797 713 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 SLC6A17Q9H1V8 727 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 VTI1BQ9UEU0 232 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 PCDHA4Q9UN74 947 aa6.05□□□□□ -1.44
USP48-215ENST00000534705 DNAJC25-GNG10A0A024R161 153 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 CBX7O95931 251 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 CAP2P40123 477 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 ERVFC1P60507 584 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 DLG4P78352 724 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 TAGLNQ01995 201 aaKnown RBP6.04□□□□□ -1.44
USP48-215ENST00000534705 MRPL58Q14197 206 aaKnown RBP6.04□□□□□ -1.44
USP48-215ENST00000534705 TAF1CQ15572 869 aaPredicted RBP6.04□□□□□ -1.44
USP48-215ENST00000534705 RALGPS1Q5JS13 557 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 ERICH6BQ5W0A0 696 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 LILRA2Q8N149 483 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 MARCH10Q8NA82 808 aaPredicted RBP6.04□□□□□ -1.44
USP48-215ENST00000534705 CXorf38Q8TB03 319 aa6.04□□□□□ -1.44
USP48-215ENST00000534705 CNOT6Q9ULM6 557 aaKnown RBP6.04□□□□□ -1.44
USP48-215ENST00000534705 RFXAPO00287 272 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 MEI1Q5TIA1 1274 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 RASIP1Q5U651 963 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 TMEM132EQ6IEE7 984 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 TTBK2Q6IQ55 1244 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 MPRIPQ6WCQ1 1025 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 GRIN3AQ8TCU5 1115 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 FAM161BQ96MY7 647 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 MCOLN1Q9GZU1 580 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 RTEL1Q9NZ71 1219 aa6.03□□□□□ -1.44
USP48-215ENST00000534705 CNTNAP4Q9C0A0 1308 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 RBM47A0AV96 593 aaKnown RBP6.02□□□□□ -1.45
USP48-215ENST00000534705 ESR1P03372 595 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 ZNF16P17020 682 aaPredicted RBP6.02□□□□□ -1.45
USP48-215ENST00000534705 LIG3P49916 1009 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 SLBPQ14493 270 aaKnown RBP eCLIP6.02□□□□□ -1.453e-8■■■■■ 73
USP48-215ENST00000534705 LETMD1Q6P1Q0 360 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 AGMOQ6ZNB7 445 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 OXR1Q8N573 874 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 PDZD8Q8NEN9 1154 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 PIWIL2Q8TC59 973 aaKnown RBP6.02□□□□□ -1.45
USP48-215ENST00000534705 GAL3ST3Q96A11 431 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 RNF32Q9H0A6 362 aa6.02□□□□□ -1.45
USP48-215ENST00000534705 CWC22Q9HCG8 908 aaKnown RBP6.02□□□□□ -1.45
USP48-215ENST00000534705 TEX51A0A1B0GUA7 166 aa6.01□□□□□ -1.45
USP48-215ENST00000534705 ADAMTS10Q9H324 1103 aa6.01□□□□□ -1.45
USP48-215ENST00000534705 KCTD3Q9Y597 815 aa6.01□□□□□ -1.45
USP48-215ENST00000534705 ABCC9O60706 1549 aa6□□□□□ -1.45
USP48-215ENST00000534705 SASH1O94885 1247 aa6□□□□□ -1.45
USP48-215ENST00000534705 TNK2Q07912 1038 aa6□□□□□ -1.45
USP48-215ENST00000534705 HDXQ7Z353 690 aa6□□□□□ -1.45
USP48-215ENST00000534705 PRRT2Q7Z6L0 340 aaPredicted RBP6□□□□□ -1.45
USP48-215ENST00000534705 ZNF605Q86T29 641 aa6□□□□□ -1.45
USP48-215ENST00000534705 CCDC84Q86UT8 332 aaPredicted RBP6□□□□□ -1.45
USP48-215ENST00000534705 CREG2Q8IUH2 290 aa6□□□□□ -1.45
USP48-215ENST00000534705 HID1Q8IV36 788 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms