RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 FAM43AQ8N2R8 423 aa6.41□□□□□ -1.38
HMGB1P40-201ENST00000525121 ERO1AQ96HE7 468 aa6.41□□□□□ -1.38
HMGB1P40-201ENST00000525121 DSCC1Q9BVC3 393 aa6.41□□□□□ -1.38
HMGB1P40-201ENST00000525121 KIAA1683Q9H0B3 1180 aa6.41□□□□□ -1.38
HMGB1P40-201ENST00000525121 KANSL2Q9H9L4 492 aa6.41□□□□□ -1.38
HMGB1P40-201ENST00000525121 GOPCQ9HD26 462 aa6.41□□□□□ -1.38
HMGB1P40-201ENST00000525121 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.41□□□□□ -1.38
HMGB1P40-201ENST00000525121 TSPY2A6NKD2 308 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 GPR25O00155 361 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 ZNF213O14771 459 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 RAD21O60216 631 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 RANBP6O60518 1105 aaKnown RBP6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 TLR2O60603 784 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 CDC45O75419 566 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 AKR1B1P15121 316 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 CHMLP26374 656 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 GCLCP48506 637 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 NT5C2P49902 561 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 RRP1BQ14684 758 aaKnown RBP6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 SH3D19Q5HYK7 790 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 RRP12Q5JTH9 1297 aaKnown RBP6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 VPS53Q5VIR6 699 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 GTF3C2Q8WUA4 911 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 ZNF296Q8WUU4 475 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 LPAR1Q92633 364 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 PTPN18Q99952 460 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 ANAPC4Q9UJX5 808 aa6.4□□□□□ -1.38
HMGB1P40-201ENST00000525121 MYH1P12882 1939 aa6.4□□□□□ -1.39
HMGB1P40-201ENST00000525121 SIPA1L1O43166 1804 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 CDK5RAP2Q96SN8 1893 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L15C9J2P7 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L13C9JLJ4 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L11C9JVI0 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L18D6R9N7 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L22D6RA61 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L17D6RBQ6 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L19D6RCP7 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L20D6RJB6 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 ORC4O43929 436 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 PRDM1O75626 825 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 TTLL1O95922 423 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 FGAP02671 866 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 RASA1P20936 1047 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 HAND2P61296 217 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 TFAP4Q01664 338 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 SP3Q02447 781 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 EVX2Q03828 476 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 CTDSPL2Q05D32 466 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 USP17L24Q0WX57 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 TRDNQ13061 729 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 PKN2Q16513 984 aaKnown RBP6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 SHROOM1Q2M3G4 852 aaPredicted RBP6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 MFSD6Q6ZSS7 791 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 CTU1Q7Z7A3 348 aaKnown RBP6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 CCAR1Q8IX12 1150 aaKnown RBP6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 TNS4Q8IZW8 715 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 ESR2Q92731 530 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 C12orf42Q96LP6 360 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 TANGO6Q9C0B7 1094 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 CNNM2Q9H8M5 875 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 CWC22Q9HCG8 908 aaKnown RBP6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 ISY1Q9ULR0 285 aaKnown RBP6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 SYNPO2Q9UMS6 1093 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 U3KPZ7 1027 aaPredicted RBP6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 LAMB1P07942 1786 aa6.39□□□□□ -1.39
HMGB1P40-201ENST00000525121 WDR46O15213 610 aaKnown RBP6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 SGSM2O43147 1006 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 GNRH1P01148 92 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 CYP2C8P10632 490 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 EEF2P13639 858 aaKnown RBP6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 VCAM1P19320 739 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 HOXD10P28358 340 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 GUCY1A2P33402 732 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 FCGRTP55899 365 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 JAG1P78504 1218 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 DGKZQ13574 1117 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 MOGSQ13724 837 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 CCDC178Q5BJE1 867 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 FAM47AQ5JRC9 791 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 AKNAD1Q5T1N1 836 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 TREML2Q5T2D2 321 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 RNF20Q5VTR2 975 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 GPAT2Q6NUI2 795 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 RALYLQ86SE5 291 aaKnown RBP6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 IQCA1Q86XH1 822 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 NEDD1Q8NHV4 660 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 ACER1Q8TDN7 264 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 STAG1Q8WVM7 1258 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 ESYT1Q9BSJ8 1104 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 KRT23Q9C075 422 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 ASCC2Q9H1I8 757 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 RPAP3Q9H6T3 665 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 VCPKMTQ9H867 229 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 ANO2Q9NQ90 1003 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 EMILIN3Q9NT22 766 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 NYAP2Q9P242 653 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 CLIP2Q9UDT6 1046 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 CPA4Q9UI42 421 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 STX8Q9UNK0 236 aa6.38□□□□□ -1.39
HMGB1P40-201ENST00000525121 TMX2Q9Y320 296 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms