RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 ITFG2Q969R8 447 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 MXD3Q9BW11 206 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 GOLGA6L6A8MZA4 724 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 C1QTNF12Q5T7M4 302 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 CCDC112Q8NEF3 446 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 GPBP1L1Q9HC44 474 aaPredicted RBP8.89□□□□□ -0.99
USP4-211ENST00000485450 ADGRA2Q96PE1 1338 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 NID2Q14112 1375 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 ERC2O15083 957 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 BRD1O95696 1058 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 PLCG2P16885 1265 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 LMOD1P29536 600 aaPredicted RBP8.89□□□□□ -0.99
USP4-211ENST00000485450 APLP1P51693 650 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 C1QTNF8P60827 252 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 TTC39AQ5SRH9 613 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 CDC37L1Q7L3B6 337 aa8.89□□□□□ -0.99
USP4-211ENST00000485450 COL11A1P12107 1806 aaPredicted RBP8.88□□□□□ -0.99
USP4-211ENST00000485450 PPP1R12AO14974 1030 aaPredicted RBP8.88□□□□□ -0.99
USP4-211ENST00000485450 POTEIP0CG38 1075 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 POTEJP0CG39 1038 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 PDE6AP16499 860 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 RBM5P52756 815 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP4-211ENST00000485450 MOGSQ13724 837 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 IGKV6D-41A0A0C4DH26 115 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 ST18O60284 1047 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 TDO2P48775 406 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 BIRC2Q13490 618 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP4-211ENST00000485450 OTUD7AQ8TE49 926 aaPredicted RBP8.88□□□□□ -0.99
USP4-211ENST00000485450 LDHCP07864 332 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 E2F4Q16254 413 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 PI16Q6UXB8 463 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 ZNF513Q8N8E2 541 aaPredicted RBP8.88□□□□□ -0.99
USP4-211ENST00000485450 NEK11Q8NG66 645 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 SLC45A1Q9Y2W3 748 aa8.88□□□□□ -0.99
USP4-211ENST00000485450 CCDC183Q5T5S1 534 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 ZSCAN25Q6NSZ9 544 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 APPBP2Q92624 585 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 GPATCH3Q96I76 525 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 USP26Q9BXU7 913 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 CCDC8Q9H0W5 538 aaPredicted RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 OSBPL5Q9H0X9 879 aaPredicted RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 DHX36Q9H2U1 1008 aaKnown RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 DDX4Q9NQI0 724 aaKnown RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 ZNF219Q9P2Y4 722 aaPredicted RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 WWC3Q9ULE0 1092 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 TTF2Q9UNY4 1162 aaKnown RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 ASTN2O75129 1339 aaPredicted RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 FLT1P17948 1338 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 APBB1O00213 710 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 SMARCA5O60264 1052 aaPredicted RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 SETQ01105 290 aaPredicted RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 C16orf71Q8IYS4 520 aaPredicted RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 CDCA5Q96FF9 252 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 ATP8A2Q9NTI2 1148 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 PCDHAC2Q9Y5I4 1007 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 AP5Z1O43299 807 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 IFIT2P09913 472 aaKnown RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 HSPA6P17066 643 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 GNAT2P19087 354 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 ANAPC15P60006 121 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 TNFAIP1Q13829 316 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 SRLQ86TD4 932 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 TXLNBQ8N3L3 684 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 FBXL16Q8N461 479 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 HOOK2Q96ED9 719 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 FAXDC2Q96IV6 333 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 STRBPQ96SI9 672 aaKnown RBP8.87□□□□□ -0.99
USP4-211ENST00000485450 KCNH4Q9UQ05 1017 aa8.87□□□□□ -0.99
USP4-211ENST00000485450 RNF113AO15541 343 aaKnown RBP8.86□□□□□ -0.99
USP4-211ENST00000485450 CCDC96Q2M329 555 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 SH3D19Q5HYK7 790 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 FBXO38Q6PIJ6 1188 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 SAMD7Q7Z3H4 446 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 CNTROBQ8N137 903 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 DNAJC18Q9H819 358 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 IL1RAPL2Q9NP60 686 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 HERC5Q9UII4 1024 aaKnown RBP8.86□□□□□ -0.99
USP4-211ENST00000485450 USP2O75604 605 aaPredicted RBP8.86□□□□□ -0.99
USP4-211ENST00000485450 SLC10A3P09131 477 aa8.86□□□□□ -0.99
USP4-211ENST00000485450 PCP11498 1178 aaKnown RBP8.86□□□□□ -0.99
USP4-211ENST00000485450 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.86□□□□□ -0.99
USP4-211ENST00000485450 MAFGO15525 162 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 DLGAP5Q15398 846 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 SAPCD2Q86UD0 394 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 SUGP1Q8IWZ8 645 aaKnown RBP8.85□□□□□ -0.99
USP4-211ENST00000485450 C16orf45Q96MC5 204 aaPredicted RBP8.85□□□□□ -0.99
USP4-211ENST00000485450 FUCA2Q9BTY2 467 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 SAGE1Q9NXZ1 904 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 GGA3Q9NZ52 723 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 HIP1O00291 1037 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 GADD45BO75293 160 aaPredicted RBP8.85□□□□□ -0.99
USP4-211ENST00000485450 CCT2P78371 535 aaKnown RBP8.85□□□□□ -0.99
USP4-211ENST00000485450 MAP3K12Q12852 859 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 TMEM87AQ8NBN3 555 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 KLRG1Q96E93 195 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 ZBTB48P10074 688 aaPredicted RBP8.85□□□□□ -0.99
USP4-211ENST00000485450 BTDP43251 543 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 LRCH2Q5VUJ6 765 aa8.85□□□□□ -0.99
USP4-211ENST00000485450 OGFOD1Q8N543 542 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms