RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 CPA4Q9UI42 421 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 AGTPBP1Q9UPW5 1226 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 CCDC171Q6TFL3 1326 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 TLR2O60603 784 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 PEX10O60683 326 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 ECM2O94769 699 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-213ENST00000481019 HSPD1P10809 573 aaKnown RBP14.6□□□□□ -0.07
PTPRF-213ENST00000481019 CTDSPL2Q05D32 466 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 PPARAQ07869 468 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 POTEEQ6S8J3 1075 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 C17orf99Q6UX52 265 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 TICAM2Q86XR7 235 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 PROCA1Q8NCQ7 364 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-213ENST00000481019 CD99L2Q8TCZ2 262 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 TBC1D2Q9BYX2 928 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 ARHGAP39Q9C0H5 1083 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 MCOLN1Q9GZU1 580 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 AS3MTQ9HBK9 375 aa14.6□□□□□ -0.07
PTPRF-213ENST00000481019 USP17L10C9JJH3 530 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 FGAP02671 866 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 AMOTL1Q8IY63 956 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 NACAP1Q9BZK3 213 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 NBPF3Q9H094 633 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 NAPBQ9H115 298 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 CABP5Q9NP86 173 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 DIAPH3Q9NSV4 1193 aa14.59□□□□□ -0.07
PTPRF-213ENST00000481019 BCRP11274 1271 aa14.58□□□□□ -0.08
PTPRF-213ENST00000481019 CHMLP26374 656 aa14.58□□□□□ -0.08
PTPRF-213ENST00000481019 SP3Q02447 781 aa14.58□□□□□ -0.08
PTPRF-213ENST00000481019 ALX1Q15699 326 aa14.58□□□□□ -0.08
PTPRF-213ENST00000481019 TMEM179Q6ZVK1 233 aa14.58□□□□□ -0.08
PTPRF-213ENST00000481019 KIAA1683Q9H0B3 1180 aa14.58□□□□□ -0.08
PTPRF-213ENST00000481019 ASCC2Q9H1I8 757 aaPredicted RBP14.58□□□□□ -0.08
PTPRF-213ENST00000481019 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.58□□□□□ -0.08
PTPRF-213ENST00000481019 IGKV6D-41A0A0C4DH26 115 aa14.57□□□□□ -0.08
PTPRF-213ENST00000481019 C19orf81C9J6K1 198 aa14.57□□□□□ -0.08
PTPRF-213ENST00000481019 FAM47AQ5JRC9 791 aa14.57□□□□□ -0.08
PTPRF-213ENST00000481019 USP17L2Q6R6M4 530 aa14.57□□□□□ -0.08
PTPRF-213ENST00000481019 CTU1Q7Z7A3 348 aaKnown RBP14.57□□□□□ -0.08
PTPRF-213ENST00000481019 MKNK2Q9HBH9 465 aa14.57□□□□□ -0.08
PTPRF-213ENST00000481019 SLC45A1Q9Y2W3 748 aa14.57□□□□□ -0.08
PTPRF-213ENST00000481019 CENPFP49454 3210 aa14.57□□□□□ -0.08
PTPRF-213ENST00000481019 EEF2P13639 858 aaKnown RBP14.56□□□□□ -0.08
PTPRF-213ENST00000481019 HAND2P61296 217 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 ICA1Q05084 483 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 OTOP1Q7RTM1 612 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 TBC1D10CQ8IV04 446 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 C12orf42Q96LP6 360 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 CCDC17Q96LX7 622 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 PARK7Q99497 189 aaKnown RBP14.56□□□□□ -0.08
PTPRF-213ENST00000481019 P2RX7Q99572 595 aaKnown RBP14.56□□□□□ -0.08
PTPRF-213ENST00000481019 FEZ1Q99689 392 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 TMOD4Q9NZQ9 345 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 ANAPC4Q9UJX5 808 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 TAOK2Q9UL54 1235 aa14.56□□□□□ -0.08
PTPRF-213ENST00000481019 HIP1O00291 1037 aa14.55□□□□□ -0.08
PTPRF-213ENST00000481019 VCAM1P19320 739 aa14.55□□□□□ -0.08
PTPRF-213ENST00000481019 HOXA7P31268 230 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-213ENST00000481019 LACTBP83111 547 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-213ENST00000481019 TMX2Q9Y320 296 aa14.55□□□□□ -0.08
PTPRF-213ENST00000481019 RLFQ13129 1914 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 NMT2O60551 498 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 ATP2B2Q01814 1243 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 PTH1RQ03431 593 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 SPICE1Q8N0Z3 855 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 ANKRD13CQ8N6S4 541 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 ERO1AQ96HE7 468 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 ABHD8Q96I13 439 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 TRIM47Q96LD4 638 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 TXNRD2Q9NNW7 524 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 TRIM17Q9Y577 477 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 ZMYM6O95789 1325 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 LAMA4Q16363 1823 aa14.54□□□□□ -0.08
PTPRF-213ENST00000481019 CNMDO75829 334 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 FGRP09769 529 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 OSBPP22059 807 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 TFAP4Q01664 338 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 CATSPERGQ6ZRH7 1159 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 ZNF444Q8N0Y2 327 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-213ENST00000481019 SMCR8Q8TEV9 937 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-213ENST00000481019 CEP95Q96GE4 821 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 RPAP3Q9H6T3 665 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-213ENST00000481019 KANSL2Q9H9L4 492 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 IL17RBQ9NRM6 502 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 RBPJLQ9UBG7 517 aa14.53□□□□□ -0.08
PTPRF-213ENST00000481019 MGAMO43451 1857 aa14.52□□□□□ -0.08
PTPRF-213ENST00000481019 PLIN4Q96Q06 1357 aa14.52□□□□□ -0.08
PTPRF-213ENST00000481019 NEDD4P46934 1319 aa14.52□□□□□ -0.08
PTPRF-213ENST00000481019 SGSM2O43147 1006 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 USP14P54578 494 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 HERVK_113P62684 666 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 PDE4BQ07343 736 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 NEDD1Q8NHV4 660 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 NUP88Q99567 741 aaPredicted RBP14.52□□□□□ -0.09
PTPRF-213ENST00000481019 DSCC1Q9BVC3 393 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 VCPKMTQ9H867 229 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 EFCC1Q9HA90 598 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 CLIP2Q9UDT6 1046 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 TAF6LQ9Y6J9 622 aa14.52□□□□□ -0.09
PTPRF-213ENST00000481019 MYH4Q9Y623 1939 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms