RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SPDYAQ5MJ70 313 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 Q6ZUG5 572 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 BICD2Q8TD16 824 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 APPBP2Q92624 585 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 TXLNGYQ9BZA5 131 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 BECN2A8MW95 431 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 KLRC4O43908 158 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 MGRN1O60291 552 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ECHS1P30084 290 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 KRT40Q6A162 431 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 KANK3Q6NY19 840 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 OSBP2Q969R2 916 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 DHX58Q96C10 678 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 HPCAL4Q9UM19 191 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ARAP2Q8WZ64 1704 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ZNF831Q5JPB2 1677 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 RASSF10A6NK89 507 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 TRIM66O15016 1216 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ARID4AP29374 1257 aaPredicted RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 XRCC4Q13426 336 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ARL6IP4Q66PJ3 421 aaKnown RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ANKRD27Q96NW4 1050 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 BAG1Q99933 345 aaPredicted RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 LGR6Q9HBX8 967 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 PLCH1Q4KWH8 1693 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 TCHHQ07283 1943 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 FAM177BA6PVY3 158 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 SMTNP53814 917 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 KDM7AQ6ZMT4 941 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 CREG2Q8IUH2 290 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 FAM155BO75949 473 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 MARSP56192 900 aaKnown RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ERVK-24P63145 666 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ANKLE2Q86XL3 938 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 PAF1Q8N7H5 531 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 PDILTQ8N807 584 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 NOA1Q8NC60 698 aaKnown RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 PLBD2Q8NHP8 589 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 FANCLQ9NW38 375 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 RAI14Q9P0K7 980 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 NFE2L3Q9Y4A8 694 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 CCDC196A0A1B0GTZ2 297 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 CHMP4BP1P59074 171 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 KIAA0753Q2KHM9 967 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 ADSSL1Q8N142 457 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 CWC15Q9P013 229 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 XDHP47989 1333 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 KCNQ3O43525 872 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 EEF1GP26641 437 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 HSPA9P38646 679 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 DNAJC21Q5F1R6 531 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 RNF26Q9BY78 433 aaPredicted RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 FBXL5Q9UKA1 691 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 C5P01031 1676 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 NBPF26B4DH59 902 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 PRPF3O43395 683 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 CCDC175P0C221 793 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 PCP11498 1178 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 PRPHP41219 470 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 NBPF10Q6P3W6 841 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 ARMC9Q7Z3E5 817 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 NBPF15Q8N660 670 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 DUOX1Q9NRD9 1551 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 KBTBD4Q9NVX7 518 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 SSU72P8A0A1W2PR75 194 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 ERLIN1O75477 346 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 BAG6P46379 1132 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 FXR1P51114 621 aaKnown RBP eCLIP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 ZNF268Q14587 947 aaPredicted RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 HOMER1Q86YM7 354 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 NOSTRINQ8IVI9 506 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 CCDC170Q8IYT3 715 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 ABCB6Q9NP58 842 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 PCDHGC5Q9Y5F6 944 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 EIF3HO15372 352 aaKnown RBP eCLIP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 ZCWPW2Q504Y3 356 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 NAALADL2Q58DX5 795 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 TEX35Q5T0J7 233 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 DAGLBQ8NCG7 672 aa6.06□□□□□ -1.44
SYNE1-220ENST00000471834 CALR3Q96L12 384 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 RPL26L1Q9UNX3 145 aaKnown RBP6.06□□□□□ -1.44
SYNE1-220ENST00000471834 CCDC102BQ68D86 513 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 ZNF790Q6PG37 636 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 RIC3Q7Z5B4 369 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 THEMISQ8N1K5 641 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 RNF10Q8N5U6 811 aaKnown RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 SYN2Q92777 582 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CARD10Q9BWT7 1032 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 MAGEF1Q9HAY2 307 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 LAMA4Q16363 1823 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CAPN15O75808 1086 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 TDO2P48775 406 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 ECM1Q16610 540 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 PDXDC2PQ6P474 469 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 AACSQ86V21 672 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CCDC191Q8NCU4 936 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 NEK11Q8NG66 645 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 FERMT2Q96AC1 680 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 MYCBPQ99417 103 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 ROBO3Q96MS0 1386 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms