RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 RASA1P20936 1047 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 TFAP4Q01664 338 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 KIF23Q02241 960 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-206ENST00000462613 SPP2Q13103 211 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 KRT32Q14532 448 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 SEPT2Q15019 361 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 USP17L2Q6R6M4 530 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 GADL1Q6ZQY3 521 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 PROCA1Q8NCQ7 364 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-206ENST00000462613 NCOA7Q8NI08 942 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 UBAC1Q9BSL1 405 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 UPF2Q9HAU5 1272 aaKnown RBP7.53□□□□□ -1.2
SF3B1-206ENST00000462613 ZCCHC17Q9NP64 241 aaKnown RBP7.53□□□□□ -1.2
SF3B1-206ENST00000462613 KCNH4Q9UQ05 1017 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 AFG3L2Q9Y4W6 797 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 MGAMO43451 1857 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 PLIN4Q96Q06 1357 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 FOXP2O15409 715 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 RAD21O60216 631 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 TTLL1O95922 423 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 SLURP2P0DP57 97 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 OSBPP22059 807 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 TM4SF4P48230 202 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 BACE1P56817 501 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 IRX3P78415 501 aaPredicted RBP7.52□□□□□ -1.21
SF3B1-206ENST00000462613 PTH1RQ03431 593 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 MTMR2Q13614 643 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 DNAJC5GQ8N7S2 189 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 NEDD1Q8NHV4 660 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 CNKSR2Q8WXI2 1034 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 LPAR1Q92633 364 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 PARK7Q99497 189 aaKnown RBP7.52□□□□□ -1.21
SF3B1-206ENST00000462613 LSG1Q9H089 658 aaKnown RBP7.52□□□□□ -1.21
SF3B1-206ENST00000462613 NYAP2Q9P242 653 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 ISY1Q9ULR0 285 aaKnown RBP7.52□□□□□ -1.21
SF3B1-206ENST00000462613 SYNPO2Q9UMS6 1093 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 STX8Q9UNK0 236 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 PARP14Q460N5 1801 aa7.52□□□□□ -1.21
SF3B1-206ENST00000462613 COL11A1P12107 1806 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 A0A0G2JLL6 359 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 TESPA1A2RU30 521 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 B4E1Z4 1266 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 KDM4AO75164 1064 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 CYP21A2P08686 494 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 HMGB1P09429 215 aaKnown RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 FGRP09769 529 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 EEF2P13639 858 aaKnown RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 HMGCS2P54868 508 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 FGD1P98174 961 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 TAF1CQ15572 869 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 ZYXQ15942 572 aaKnown RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 FAM47AQ5JRC9 791 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 CREB3L3Q68CJ9 461 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 PRRT2Q7Z6L0 340 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 ANKRD23Q86SG2 305 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 IFNL1Q8IU54 200 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 JMYQ8N9B5 988 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 SMCR8Q8TEV9 937 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 TTC14Q96N46 770 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 KIAA1683Q9H0B3 1180 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 IL25Q9H293 177 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 ZFYVE28Q9HCC9 887 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 SAGE1Q9NXZ1 904 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 AGTPBP1Q9UPW5 1226 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.51□□□□□ -1.21
SF3B1-206ENST00000462613 CASP8AP2Q9UKL3 1982 aa7.51□□□□□ -1.21
SF3B1-206ENST00000462613 E7EWF7 191 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 PDHXO00330 501 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 SLC27A2O14975 620 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 WDR46O15213 610 aaKnown RBP7.5□□□□□ -1.21
SF3B1-206ENST00000462613 PSMA5P28066 241 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 MCM5P33992 734 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 GJA5P36382 358 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 EVX2Q03828 476 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 RRP1BQ14684 758 aaKnown RBP7.5□□□□□ -1.21
SF3B1-206ENST00000462613 ARHGEF6Q15052 776 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 NECTIN1Q15223 517 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 SH3D19Q5HYK7 790 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 CCDC84Q86UT8 332 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-206ENST00000462613 DGKHQ86XP1 1220 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 TBC1D10CQ8IV04 446 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 GTF3C2Q8WUA4 911 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-206ENST00000462613 CEP95Q96GE4 821 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 MS4A4AQ96JQ5 239 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 C12orf42Q96LP6 360 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 TANGO6Q9C0B7 1094 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 VCPKMTQ9H867 229 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 KAT14Q9H8E8 782 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 TCP11L1Q9NUJ3 509 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 MTMR4Q9NYA4 1195 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-206ENST00000462613 CLIP2Q9UDT6 1046 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 SLC45A1Q9Y2W3 748 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 TMX2Q9Y320 296 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 CTDP1Q9Y5B0 961 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-206ENST00000462613 NEDD4P46934 1319 aa7.5□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L15C9J2P7 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 BTBD19C9JJ37 291 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L13C9JLJ4 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L11C9JVI0 530 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms