RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 DPH2Q9BQC3 489 aaPredicted RBP6.18□□□□□ -1.42
HMGB3P23-201ENST00000414981 BRMS1Q9HCU9 246 aa6.18□□□□□ -1.42
HMGB3P23-201ENST00000414981 SEMA3GQ9NS98 782 aa6.18□□□□□ -1.42
HMGB3P23-201ENST00000414981 ST14Q9Y5Y6 855 aa6.18□□□□□ -1.42
HMGB3P23-201ENST00000414981 CAPN6Q9Y6Q1 641 aa6.18□□□□□ -1.42
HMGB3P23-201ENST00000414981 SLC22A31A6NKX4 558 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 SCAMP3O14828 347 aaKnown RBP6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 TLR3O15455 904 aaKnown RBP6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 CBX7O95931 251 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 PLCL1Q15111 1095 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 SLC23A3Q6PIS1 610 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 SLITRK4Q8IW52 837 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 PI4K2BQ8TCG2 481 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 CCDC74BQ96LY2 380 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 PITPNM2Q9BZ72 1349 aa6.17□□□□□ -1.42
HMGB3P23-201ENST00000414981 CRKP46108 304 aa6.16□□□□□ -1.42
HMGB3P23-201ENST00000414981 ZNF165P49910 485 aa6.16□□□□□ -1.42
HMGB3P23-201ENST00000414981 ZNF792Q3KQV3 632 aa6.16□□□□□ -1.42
HMGB3P23-201ENST00000414981 EAF1Q96JC9 268 aaPredicted RBP6.16□□□□□ -1.42
HMGB3P23-201ENST00000414981 SPON2Q9BUD6 331 aa6.16□□□□□ -1.42
HMGB3P23-201ENST00000414981 UBP1Q9NZI7 540 aa6.16□□□□□ -1.42
HMGB3P23-201ENST00000414981 PCDHB14Q9Y5E9 798 aa6.16□□□□□ -1.42
HMGB3P23-201ENST00000414981 NISCHQ9Y2I1 1504 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 JUNBP17275 347 aaPredicted RBP6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 CD96P40200 585 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 TNK2Q07912 1038 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 APOBRQ0VD83 1088 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 IKZF1Q13422 519 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 LRRFIP1Q32MZ4 808 aaKnown RBP6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 CDKAL1Q5VV42 579 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 CDCP2Q5VXM1 449 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 USP48Q86UV5 1035 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 KIAA0825Q8IV33 1275 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 NKD1Q969G9 470 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 MBNL3Q9NUK0 354 aaKnown RBP6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 KCNH3Q9ULD8 1083 aa6.15□□□□□ -1.42
HMGB3P23-201ENST00000414981 RGS13O14921 159 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 PAX4O43316 350 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 DNAJA2O60884 412 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 RECKO95980 971 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 RNASE1P07998 156 aaKnown RBP6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 ITGB5P18084 799 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 ZP2Q05996 745 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 SEZ6Q53EL9 994 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 ATG4DQ86TL0 474 aaPredicted RBP6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 BAHD1Q8TBE0 780 aaPredicted RBP6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 RNF141Q8WVD5 230 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 UBE2FQ969M7 185 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 VWCEQ96DN2 955 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 MRRFQ96E11 262 aaKnown RBP6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 Q96M66 194 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 GMIPQ9P107 970 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 KLHL3Q9UH77 587 aa6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 DDX41Q9UJV9 622 aaKnown RBP6.14□□□□□ -1.43
HMGB3P23-201ENST00000414981 BIN1O00499 593 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 SRFP11831 508 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 GBP1P32455 592 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 MCM4P33991 863 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 CLCQ05315 142 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 PHACTR4Q8IZ21 702 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 ASIC4Q96FT7 647 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 FMNL2Q96PY5 1086 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 KIF2CQ99661 725 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 GPR62Q9BZJ7 368 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 DUSP15Q9H1R2 295 aaPredicted RBP6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 TRIT1Q9H3H1 467 aaKnown RBP6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 CNNM2Q9H8M5 875 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 ATP13A1Q9HD20 1204 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 ZSWIM5Q9P217 1185 aa6.13□□□□□ -1.43
HMGB3P23-201ENST00000414981 H3BS24 57 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 CCNFP41002 786 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 TNNI2P48788 182 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 RACK1P63244 317 aaKnown RBP6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 ARSHQ5FYA8 562 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 TMPRSS7Q7RTY8 843 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 METTL16Q86W50 562 aaKnown RBP6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 ZNF654Q8IZM8 581 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 ATG4CQ96DT6 458 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 KREMEN1Q96MU8 473 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 ASPNQ9BXN1 380 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 KRTAP4-8Q9BYQ9 185 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 ADAMTS6Q9UKP5 1117 aa6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 CCDC9Q9Y3X0 531 aaKnown RBP6.12□□□□□ -1.43
HMGB3P23-201ENST00000414981 RAG1P15918 1043 aa6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 RAD51AP2Q09MP3 1159 aa6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 ZNF394Q53GI3 561 aa6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 INTS3Q68E01 1043 aaKnown RBP6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 GK5Q6ZS86 529 aa6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 DTWD2Q8NBA8 298 aa6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 RC3H2Q9HBD1 1191 aaKnown RBP6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 GPATCH2Q9NW75 528 aa6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 KIAA1522Q9P206 1035 aaPredicted RBP6.11□□□□□ -1.43
HMGB3P23-201ENST00000414981 UNCXA6NJT0 531 aa6.1□□□□□ -1.43
HMGB3P23-201ENST00000414981 MEIS3P2A8K0S8 358 aa6.1□□□□□ -1.43
HMGB3P23-201ENST00000414981 IMPDH2P12268 514 aa6.1□□□□□ -1.43
HMGB3P23-201ENST00000414981 CHMP4BP1P59074 171 aa6.1□□□□□ -1.43
HMGB3P23-201ENST00000414981 LRRN4CLQ8ND94 238 aa6.1□□□□□ -1.43
HMGB3P23-201ENST00000414981 ENOX1Q8TC92 643 aaKnown RBP6.1□□□□□ -1.43
HMGB3P23-201ENST00000414981 CCDC120Q96HB5 630 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms