RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 KBTBD3Q8NAB2 608 aa17.49■□□□□ 0.39
NIF3L1-205ENST00000409588 GPRC5AQ8NFJ5 357 aa17.49■□□□□ 0.39
NIF3L1-205ENST00000409588 ARMT1Q9H993 441 aa17.49■□□□□ 0.39
NIF3L1-205ENST00000409588 EMILIN3Q9NT22 766 aa17.49■□□□□ 0.39
NIF3L1-205ENST00000409588 PCDHB15Q9Y5E8 787 aa17.49■□□□□ 0.39
NIF3L1-205ENST00000409588 CENPFP49454 3210 aa17.49■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L15C9J2P7 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L13C9JLJ4 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L11C9JVI0 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L18D6R9N7 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L22D6RA61 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L17D6RBQ6 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L19D6RCP7 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L20D6RJB6 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 GALR2O43603 387 aaPredicted RBP17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 MBD4O95243 580 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 FLT3LGP49771 235 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 PRKCZQ05513 592 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 USP17L24Q0WX57 530 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 SH3TC2Q8TF17 1288 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 SDR42E1Q8WUS8 393 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 GCC1Q96CN9 775 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 P2RX7Q99572 595 aaKnown RBP17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 SIPA1L1O43166 1804 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 ATAD5Q96QE3 1844 aa17.48■□□□□ 0.39
NIF3L1-205ENST00000409588 ADCY3O60266 1144 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 GLRX3O76003 335 aaKnown RBP17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 GNAT2P19087 354 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 HERVK_113P62684 666 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 C12orf60Q5U649 245 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 TMEM179Q6ZVK1 233 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 TICAM2Q86XR7 235 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 FEZ1Q99689 392 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 BIN2Q9UBW5 565 aaPredicted RBP17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 LOC285556D6RIA3 1793 aa17.47■□□□□ 0.39
NIF3L1-205ENST00000409588 GJB1P08034 283 aa17.46■□□□□ 0.39
NIF3L1-205ENST00000409588 EN2P19622 333 aaPredicted RBP17.46■□□□□ 0.39
NIF3L1-205ENST00000409588 MAPK4P31152 587 aa17.46■□□□□ 0.39
NIF3L1-205ENST00000409588 HDAC1Q13547 482 aaPredicted RBP17.46■□□□□ 0.39
NIF3L1-205ENST00000409588 PRPF38BQ5VTL8 546 aaKnown RBP17.46■□□□□ 0.39
NIF3L1-205ENST00000409588 SH2D4AQ9H788 454 aa17.46■□□□□ 0.39
NIF3L1-205ENST00000409588 SLC4A4Q9Y6R1 1079 aa17.46■□□□□ 0.39
NIF3L1-205ENST00000409588 RBBP6Q7Z6E9 1792 aaKnown RBP17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 USP17L12C9JPN9 530 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 USP17L21D6R901 530 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 RNF113AO15541 343 aaKnown RBP17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 CCNA1P78396 465 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 SBK1Q52WX2 424 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 LBX2Q6XYB7 198 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 CATSPERGQ6ZRH7 1159 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 CCAR1Q8IX12 1150 aaKnown RBP17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 TRMT44Q8IYL2 757 aaKnown RBP17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 APPBP2Q92624 585 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 STRBPQ96SI9 672 aaKnown RBP17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 PUS7LQ9H0K6 701 aaKnown RBP17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 HOXC10Q9NYD6 342 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 ARPP21Q9UBL0 812 aaPredicted RBP17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 GABRQQ9UN88 632 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 RABGAP1Q9Y3P9 1069 aa17.45■□□□□ 0.38
NIF3L1-205ENST00000409588 MPHOSPH10O00566 681 aaKnown RBP17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 PRKAB2O43741 272 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 XRCC5P13010 732 aaKnown RBP17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 GJA8P48165 433 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 C16orf86Q6ZW13 317 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 LPAR1Q92633 364 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 RNF208Q9H0X6 261 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 ZNF287Q9HBT7 754 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 RBPJLQ9UBG7 517 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 GJD2Q9UKL4 321 aa17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 KIAA0100Q14667 2235 aaKnown RBP17.44■□□□□ 0.38
NIF3L1-205ENST00000409588 ECM2O94769 699 aaPredicted RBP17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 CCL5P13501 91 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 GUCY1A2P33402 732 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 CDK8P49336 464 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 SEPT2Q15019 361 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 SHROOM1Q2M3G4 852 aaPredicted RBP17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 CTR9Q6PD62 1173 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 SOCS4Q8WXH5 440 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 KANSL2Q9H9L4 492 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 ARHGEF10LQ9HCE6 1279 aa17.43■□□□□ 0.38
NIF3L1-205ENST00000409588 PDE4DIPQ5VU43 2346 aa17.42■□□□□ 0.38
NIF3L1-205ENST00000409588 MGAMO43451 1857 aa17.42■□□□□ 0.38
NIF3L1-205ENST00000409588 MX1P20591 662 aa17.42■□□□□ 0.38
NIF3L1-205ENST00000409588 ERVK-9P63128 1117 aa17.42■□□□□ 0.38
NIF3L1-205ENST00000409588 ERVK-24P63145 666 aa17.42■□□□□ 0.38
NIF3L1-205ENST00000409588 COG2Q14746 738 aa17.42■□□□□ 0.38
NIF3L1-205ENST00000409588 NUDT12Q9BQG2 462 aa17.42■□□□□ 0.38
NIF3L1-205ENST00000409588 PATL2C9JE40 543 aaKnown RBP17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 VCAM1P19320 739 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 MTFR1Q15390 333 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 ANKRD45Q5TZF3 282 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 PI4K2BQ8TCG2 481 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 ACER1Q8TDN7 264 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 CRBNQ96SW2 442 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 NACAP1Q9BZK3 213 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 RWDD1Q9H446 243 aaPredicted RBP17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 TMX2Q9Y320 296 aa17.41■□□□□ 0.38
NIF3L1-205ENST00000409588 GSG1L2A8MUP6 293 aa17.4■□□□□ 0.38
NIF3L1-205ENST00000409588 SGPL1O95470 568 aa17.4■□□□□ 0.38
NIF3L1-205ENST00000409588 HMGCRP04035 888 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms