RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 USP49Q70CQ1 688 aa23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 PKNOX2Q96KN3 472 aa23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 PDE4BQ07343 736 aa23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 NPY5RQ15761 445 aa23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 ARMCX5Q6P1M9 558 aa23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 SLC51AQ86UW1 340 aa23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 DZIP1Q86YF9 867 aaKnown RBP23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 MAN1B1Q9UKM7 699 aa23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 CNTNAP5Q8WYK1 1306 aa23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 TNRC6CQ9HCJ0 1690 aaKnown RBP23.86■■□□□ 1.41
CCDC88B-203ENST00000359902 UBAP1LF5GYI3 381 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 SARSP49591 514 aaKnown RBP23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 TRAPPC3LQ5T215 181 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 THSD7AQ9UPZ6 1657 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 LAMB1P07942 1786 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 MAST2Q6P0Q8 1798 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 CCDC88AQ3V6T2 1871 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 ACTN4O43707 911 aaKnown RBP23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 PRR29P0C7W0 189 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 CTCFLQ8NI51 663 aaPredicted RBP23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 TNFRSF25Q93038 417 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 KCND1Q9NSA2 647 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 ANKIB1Q9P2G1 1089 aa23.85■■□□□ 1.41
CCDC88B-203ENST00000359902 ZNF710Q8N1W2 664 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 CCDC150Q8NCX0 1101 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 MCM9Q9NXL9 1143 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 KIAA1551Q9HCM1 1747 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 USP17L8P0C7I0 530 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 GRAPQ13588 217 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 NFIXQ14938 502 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 RCSD1Q6JBY9 416 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 MTERF4Q7Z6M4 381 aaKnown RBP23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 PDILTQ8N807 584 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 GRAPLQ8TC17 118 aaPredicted RBP23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 FANCLQ9NW38 375 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 MKRN1Q9UHC7 482 aaKnown RBP23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 LEMD3Q9Y2U8 911 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 TAF1LQ8IZX4 1826 aa23.84■■□□□ 1.41
CCDC88B-203ENST00000359902 TSPY2A6NKD2 308 aa23.83■■□□□ 1.41
CCDC88B-203ENST00000359902 CCAR2Q8N163 923 aaKnown RBP23.83■■□□□ 1.41
CCDC88B-203ENST00000359902 DPF2Q92785 391 aa23.83■■□□□ 1.41
CCDC88B-203ENST00000359902 NOL10Q9BSC4 688 aaKnown RBP23.83■■□□□ 1.41
CCDC88B-203ENST00000359902 WNT7AO00755 349 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 MYO1BO43795 1136 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 UBASH3AP57075 661 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 NOM1Q5C9Z4 860 aaKnown RBP23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 KANK3Q6NY19 840 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 NYAP1Q6ZVC0 841 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 GRAMD1CQ8IYS0 662 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 WDR66Q8TBY9 1149 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 BRMS1Q9HCU9 246 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 PAXBP1Q9Y5B6 917 aa23.83■■□□□ 1.4
CCDC88B-203ENST00000359902 CTIFO43310 598 aaKnown RBP23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 LDHBP07195 334 aaKnown RBP23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 SMARCE1Q969G3 411 aa23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 LY75O60449 1722 aa23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 SERPINC1P01008 464 aa23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 MORC3Q14149 939 aa23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 C12orf60Q5U649 245 aa23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 FAM196AQ6ZSG2 479 aa23.82■■□□□ 1.4
CCDC88B-203ENST00000359902 CBFA2T2O43439 604 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 SFPQP23246 707 aaKnown RBP eCLIP23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 DHX8Q14562 1220 aaKnown RBP23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 SLC4A8Q2Y0W8 1093 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 CEP135Q66GS9 1140 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 MLKLQ8NB16 471 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 EPSTI1Q96J88 318 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 TRMT1Q9NXH9 659 aaKnown RBP23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 IGSF3O75054 1194 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 BMP15O95972 392 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 CNBD1Q8NA66 436 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 SPATA20Q8TB22 786 aa23.81■■□□□ 1.4
CCDC88B-203ENST00000359902 A0A087X0B3 334 aa23.8■■□□□ 1.4
CCDC88B-203ENST00000359902 SCG2P13521 617 aa23.8■■□□□ 1.4
CCDC88B-203ENST00000359902 PTPN14Q15678 1187 aa23.8■■□□□ 1.4
CCDC88B-203ENST00000359902 TRIML1Q8N9V2 468 aa23.8■■□□□ 1.4
CCDC88B-203ENST00000359902 SH3RF3Q8TEJ3 882 aaPredicted RBP23.8■■□□□ 1.4
CCDC88B-203ENST00000359902 FERMT2Q96AC1 680 aa23.8■■□□□ 1.4
CCDC88B-203ENST00000359902 VEGFAP15692 232 aaPredicted RBP23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 TFAP4Q01664 338 aa23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 ZNF174Q15697 407 aa23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 GRIK5Q16478 980 aa23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 PFKFB3Q16875 520 aaPredicted RBP23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 IL17RBQ9NRM6 502 aa23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 XDHP47989 1333 aa23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 USP5P45974 858 aa23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 CFAP100Q494V2 611 aa23.79■■□□□ 1.4
CCDC88B-203ENST00000359902 SBF2Q86WG5 1849 aa23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 FMR1Q06787 632 aaKnown RBP eCLIP23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 ZNF827Q17R98 1081 aa23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 TTC38Q5R3I4 469 aa23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 E4F1Q66K89 784 aaPredicted RBP23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 DHX58Q96C10 678 aa23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 DYNLL2Q96FJ2 89 aa23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 BAZ2BQ9UIF8 2168 aaKnown RBP23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 DIXDC1Q155Q3 683 aa23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 DGKHQ86XP1 1220 aa23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 SYMPKQ92797 1274 aaKnown RBP23.78■■□□□ 1.4
CCDC88B-203ENST00000359902 KIF5BP33176 963 aa23.77■■□□□ 1.4
CCDC88B-203ENST00000359902 NLRP5P59047 1200 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms