RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 CATIPQ7Z7H3 387 aa24.61■■□□□ 1.53
LIME1-210ENST00000621325 SHISA4Q96DD7 197 aa24.61■■□□□ 1.53
LIME1-210ENST00000621325 KIAA1551Q9HCM1 1747 aa24.61■■□□□ 1.53
LIME1-210ENST00000621325 DIS3L2Q8IYB7 885 aaKnown RBP24.61■■□□□ 1.53
LIME1-210ENST00000621325 TBC1D16Q8TBP0 767 aa24.61■■□□□ 1.53
LIME1-210ENST00000621325 CTAGE5O15320 804 aa24.6■■□□□ 1.53
LIME1-210ENST00000621325 MSNP26038 577 aaKnown RBP24.6■■□□□ 1.53
LIME1-210ENST00000621325 USP5P45974 858 aa24.6■■□□□ 1.53
LIME1-210ENST00000621325 FUT2Q10981 343 aa24.6■■□□□ 1.53
LIME1-210ENST00000621325 TMED8Q6PL24 325 aaPredicted RBP24.6■■□□□ 1.53
LIME1-210ENST00000621325 MROH7-TTC4A0A0A0MT08 1334 aa24.6■■□□□ 1.53
LIME1-210ENST00000621325 KLRG2A4D1S0 409 aaPredicted RBP24.6■■□□□ 1.53
LIME1-210ENST00000621325 NOSTRINQ8IVI9 506 aa24.6■■□□□ 1.53
LIME1-210ENST00000621325 DYNLL2Q96FJ2 89 aa24.6■■□□□ 1.53
LIME1-210ENST00000621325 ZNF165P49910 485 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 COL23A1Q86Y22 540 aaPredicted RBP24.59■■□□□ 1.53
LIME1-210ENST00000621325 CRAMP1Q96RY5 1269 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 ZHX1Q9UKY1 873 aaPredicted RBP24.59■■□□□ 1.53
LIME1-210ENST00000621325 LAMB1P07942 1786 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 SLC3A2P08195 630 aaKnown RBP24.59■■□□□ 1.53
LIME1-210ENST00000621325 IL1R1P14778 569 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 NR5A1Q13285 461 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 C12orf60Q5U649 245 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 C11orf57Q6ZUT1 292 aaPredicted RBP24.59■■□□□ 1.53
LIME1-210ENST00000621325 OXER1Q8TDS5 423 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 TGFBRAP1Q8WUH2 860 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 ZKSCAN5Q9Y2L8 839 aa24.59■■□□□ 1.53
LIME1-210ENST00000621325 PKN1Q16512 942 aa24.58■■□□□ 1.53
LIME1-210ENST00000621325 C6orf229H3BNL8 230 aa24.57■■□□□ 1.52
LIME1-210ENST00000621325 TOB1P50616 345 aaPredicted RBP24.57■■□□□ 1.52
LIME1-210ENST00000621325 GSTO1P78417 241 aa24.57■■□□□ 1.52
LIME1-210ENST00000621325 PDE4BQ07343 736 aa24.57■■□□□ 1.52
LIME1-210ENST00000621325 RTFDC1Q9BY42 306 aaPredicted RBP24.57■■□□□ 1.52
LIME1-210ENST00000621325 RNF26Q9BY78 433 aaPredicted RBP24.57■■□□□ 1.52
LIME1-210ENST00000621325 TSPY2A6NKD2 308 aa24.57■■□□□ 1.52
LIME1-210ENST00000621325 PFKFB1P16118 471 aa24.57■■□□□ 1.52
LIME1-210ENST00000621325 SAFBQ15424 915 aaKnown RBP eCLIP24.57■■□□□ 1.52
LIME1-210ENST00000621325 OLFM4Q6UX06 510 aa24.57■■□□□ 1.52
LIME1-210ENST00000621325 SDF4Q9BRK5 362 aa24.57■■□□□ 1.52
LIME1-210ENST00000621325 V9GY48 417 aaPredicted RBP24.57■■□□□ 1.52
LIME1-210ENST00000621325 APBA3O96018 575 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 CMA1P23946 247 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 PPP4CP60510 307 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 PPP2R5BQ15173 497 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 CLIC6Q96NY7 704 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 VPS54Q9P1Q0 977 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 BAG3O95817 575 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 MAPKAPK5Q8IW41 473 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 AKT1S1Q96B36 256 aa24.56■■□□□ 1.52
LIME1-210ENST00000621325 PPEF1O14829 653 aaPredicted RBP24.55■■□□□ 1.52
LIME1-210ENST00000621325 RBM6P78332 1123 aaKnown RBP24.55■■□□□ 1.52
LIME1-210ENST00000621325 RCSD1Q6JBY9 416 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 SHC4Q6S5L8 630 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 ZNF830Q96NB3 372 aaPredicted RBP24.55■■□□□ 1.52
LIME1-210ENST00000621325 SAP30BPQ9UHR5 308 aaKnown RBP24.55■■□□□ 1.52
LIME1-210ENST00000621325 PPP6R2O75170 966 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 DDAH1O94760 285 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 ZNF202O95125 648 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 BTDP43251 543 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 MFSD14BQ5SR56 506 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 SLC44A5Q8NCS7 719 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 FBXW7Q969H0 707 aa24.55■■□□□ 1.52
LIME1-210ENST00000621325 FOXP1Q9H334 677 aaPredicted RBP24.55■■□□□ 1.52
LIME1-210ENST00000621325 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.55■■□□□ 1.52
LIME1-210ENST00000621325 DLEC1Q9Y238 1755 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 TFAP4Q01664 338 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 AKAP17AQ02040 695 aaKnown RBP24.54■■□□□ 1.52
LIME1-210ENST00000621325 STX1AQ16623 288 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 TMTC3Q6ZXV5 915 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 RIMBP2O15034 1052 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 LDHCP07864 332 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 PLCD1P51178 756 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 IL17RBQ9NRM6 502 aa24.54■■□□□ 1.52
LIME1-210ENST00000621325 RBM28Q9NW13 759 aaKnown RBP24.54■■□□□ 1.52
LIME1-210ENST00000621325 PRPF3O43395 683 aaKnown RBP24.53■■□□□ 1.52
LIME1-210ENST00000621325 CALM1P0DP23 149 aa24.53■■□□□ 1.52
LIME1-210ENST00000621325 CALM2P0DP24 149 aa24.53■■□□□ 1.52
LIME1-210ENST00000621325 CALM3P0DP25 149 aa24.53■■□□□ 1.52
LIME1-210ENST00000621325 SRBD1Q8N5C6 995 aaKnown RBP24.53■■□□□ 1.52
LIME1-210ENST00000621325 NOL10Q9BSC4 688 aaKnown RBP24.53■■□□□ 1.52
LIME1-210ENST00000621325 ANKRD31Q8N7Z5 1873 aa24.53■■□□□ 1.52
LIME1-210ENST00000621325 BAZ2BQ9UIF8 2168 aaKnown RBP24.53■■□□□ 1.52
LIME1-210ENST00000621325 MYH6P13533 1939 aa24.53■■□□□ 1.52
LIME1-210ENST00000621325 PLSCR1O15162 318 aa24.52■■□□□ 1.52
LIME1-210ENST00000621325 IQCB1Q15051 598 aa24.52■■□□□ 1.52
LIME1-210ENST00000621325 SP8Q8IXZ3 490 aa24.52■■□□□ 1.52
LIME1-210ENST00000621325 NLGN1Q8N2Q7 840 aa24.52■■□□□ 1.52
LIME1-210ENST00000621325 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.52■■□□□ 1.52
LIME1-210ENST00000621325 FAM205CA6NFA0 338 aa24.52■■□□□ 1.52
LIME1-210ENST00000621325 IGSF3O75054 1194 aa24.52■■□□□ 1.52
LIME1-210ENST00000621325 JMYQ8N9B5 988 aa24.52■■□□□ 1.52
LIME1-210ENST00000621325 CNTNAP5Q8WYK1 1306 aa24.51■■□□□ 1.51
LIME1-210ENST00000621325 GPR75-ASB3A0A0A6YYF3 556 aa24.51■■□□□ 1.51
LIME1-210ENST00000621325 SRGNP10124 158 aa24.51■■□□□ 1.51
LIME1-210ENST00000621325 ATP2B1P20020 1258 aa24.51■■□□□ 1.51
LIME1-210ENST00000621325 SPC24Q8NBT2 197 aa24.51■■□□□ 1.51
LIME1-210ENST00000621325 CTCFLQ8NI51 663 aaPredicted RBP24.51■■□□□ 1.51
LIME1-210ENST00000621325 ATP6V0A2Q9Y487 856 aa24.51■■□□□ 1.51
LIME1-210ENST00000621325 PCDHB6Q9Y5E3 794 aa24.51■■□□□ 1.51
LIME1-210ENST00000621325 TTC12Q9H892 705 aaPredicted RBP24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms