RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 DNAJC18Q9H819 358 aa16.58■□□□□ 0.24
TRIM28-211ENST00000597968 PIH1D3Q9NQM4 214 aaKnown RBP16.58■□□□□ 0.24
TRIM28-211ENST00000597968 PAK6Q9NQU5 681 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-211ENST00000597968 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-211ENST00000597968 FOCADQ5VW36 1801 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 INHAP05111 366 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 IRX3P78415 501 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-211ENST00000597968 MTMR2Q13614 643 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 TATDN1Q6P1N9 297 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 ANKLE1Q8NAG6 615 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 TLR7Q9NYK1 1049 aaKnown RBP16.57■□□□□ 0.24
TRIM28-211ENST00000597968 SERPINB13Q9UIV8 391 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 PALD1Q9ULE6 856 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 ZBTB21Q9ULJ3 1066 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 DDX19BQ9UMR2 479 aa16.57■□□□□ 0.24
TRIM28-211ENST00000597968 ATAD5Q96QE3 1844 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 ECM2O94769 699 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-211ENST00000597968 HMGCRP04035 888 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 USP14P54578 494 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 TRMT44Q8IYL2 757 aaKnown RBP16.56■□□□□ 0.24
TRIM28-211ENST00000597968 CLASRPQ8N2M8 674 aaKnown RBP16.56■□□□□ 0.24
TRIM28-211ENST00000597968 MAGEB6Q8N7X4 407 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 SOCS4Q8WXH5 440 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 KIF1BPQ96EK5 621 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 C12orf42Q96LP6 360 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 UNC93B1Q9H1C4 597 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 NR2E3Q9Y5X4 410 aa16.56■□□□□ 0.24
TRIM28-211ENST00000597968 FARP2O94887 1054 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-211ENST00000597968 XRCC5P13010 732 aaKnown RBP16.55■□□□□ 0.24
TRIM28-211ENST00000597968 USP5P45974 858 aa16.55■□□□□ 0.24
TRIM28-211ENST00000597968 USP17L2Q6R6M4 530 aa16.55■□□□□ 0.24
TRIM28-211ENST00000597968 AACSQ86V21 672 aa16.55■□□□□ 0.24
TRIM28-211ENST00000597968 GPRC5AQ8NFJ5 357 aa16.55■□□□□ 0.24
TRIM28-211ENST00000597968 RHPN1Q8TCX5 695 aa16.55■□□□□ 0.24
TRIM28-211ENST00000597968 CRISPLD2Q9H0B8 497 aa16.55■□□□□ 0.24
TRIM28-211ENST00000597968 GJD2Q9UKL4 321 aa16.55■□□□□ 0.24
TRIM28-211ENST00000597968 SIPA1L1O43166 1804 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 RPTORQ8N122 1335 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 RAB11FIP3O75154 756 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 ELNP15502 786 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 MAPK4P31152 587 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 HERVK_113P62684 666 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 DPF3Q92784 378 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 EXOC6BQ9Y2D4 811 aa16.54■□□□□ 0.24
TRIM28-211ENST00000597968 H0YGN5 161 aa16.53■□□□□ 0.24
TRIM28-211ENST00000597968 DYNLL1P63167 89 aaKnown RBP16.53■□□□□ 0.24
TRIM28-211ENST00000597968 NUDT12Q9BQG2 462 aa16.53■□□□□ 0.24
TRIM28-211ENST00000597968 RIOK1Q9BRS2 568 aaKnown RBP16.53■□□□□ 0.24
TRIM28-211ENST00000597968 TFRCP02786 760 aaKnown RBP16.52■□□□□ 0.24
TRIM28-211ENST00000597968 LBX2Q6XYB7 198 aa16.52■□□□□ 0.24
TRIM28-211ENST00000597968 MIGA1Q8NAN2 632 aa16.52■□□□□ 0.24
TRIM28-211ENST00000597968 PANK1Q8TE04 598 aa16.52■□□□□ 0.24
TRIM28-211ENST00000597968 DEFB118Q96PH6 123 aa16.52■□□□□ 0.24
TRIM28-211ENST00000597968 P2RX7Q99572 595 aaKnown RBP16.52■□□□□ 0.24
TRIM28-211ENST00000597968 KIAA1683Q9H0B3 1180 aa16.52■□□□□ 0.24
TRIM28-211ENST00000597968 HMX1Q9NP08 348 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-211ENST00000597968 CABP5Q9NP86 173 aa16.52■□□□□ 0.24
TRIM28-211ENST00000597968 ZBTB40Q9NUA8 1239 aa16.52■□□□□ 0.24
TRIM28-211ENST00000597968 COLQQ9Y215 455 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-211ENST00000597968 CDK5RAP2Q96SN8 1893 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 A0A1W2PPC1 479 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L15C9J2P7 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L13C9JLJ4 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L11C9JVI0 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L18D6R9N7 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L22D6RA61 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L17D6RBQ6 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L19D6RCP7 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L20D6RJB6 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 GDF11O95390 407 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 GH2P01242 217 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 FXR1P51114 621 aaKnown RBP eCLIP16.51■□□□□ 0.232e-9■■■■□ 22.7
TRIM28-211ENST00000597968 CCNA1P78396 465 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 JAG1P78504 1218 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 USP17L24Q0WX57 530 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 PDE3AQ14432 1141 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 CERKLQ49MI3 558 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-211ENST00000597968 CRNKL1Q9BZJ0 848 aaKnown RBP16.51■□□□□ 0.23
TRIM28-211ENST00000597968 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.51■□□□□ 0.23
TRIM28-211ENST00000597968 ANTXR1Q9H6X2 564 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 EMILIN3Q9NT22 766 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 SAP30BPQ9UHR5 308 aaKnown RBP16.51■□□□□ 0.23
TRIM28-211ENST00000597968 RABGAP1Q9Y3P9 1069 aa16.51■□□□□ 0.23
TRIM28-211ENST00000597968 MAGEB6P1A0A0J9YX57 407 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 GLRX3O76003 335 aaKnown RBP16.5■□□□□ 0.23
TRIM28-211ENST00000597968 IFIT2P09913 472 aaKnown RBP16.5■□□□□ 0.23
TRIM28-211ENST00000597968 ERVK-9P63128 1117 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 ERVK-24P63145 666 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 ABCB5Q2M3G0 1257 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 SLC9C2Q5TAH2 1124 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 MAP3K21Q5TCX8 1036 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 NECAB2Q7Z6G3 386 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 CCAR1Q8IX12 1150 aaKnown RBP16.5■□□□□ 0.23
TRIM28-211ENST00000597968 RBPJLQ9UBG7 517 aa16.5■□□□□ 0.23
TRIM28-211ENST00000597968 POLR3DP05423 398 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-211ENST00000597968 GABPAQ06546 454 aa16.49■□□□□ 0.23
TRIM28-211ENST00000597968 FEZ1Q99689 392 aa16.49■□□□□ 0.23
TRIM28-211ENST00000597968 IL1RAPL2Q9NP60 686 aa16.49■□□□□ 0.23
TRIM28-211ENST00000597968 EVI5O60447 810 aa16.48■□□□□ 0.23
TRIM28-211ENST00000597968 PDE6AP16499 860 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms