RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 TSPY3P0CV98 308 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 TSPY8P0CW00 308 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 TFAP4Q01664 338 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 BECN1Q14457 450 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 SUPT20HL1Q3ZLR7 823 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 Q6ZUG5 572 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 HSCBQ8IWL3 235 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 UBAC1Q9BSL1 405 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 DNAJC18Q9H819 358 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 TCP11L1Q9NUJ3 509 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 POLR2AP24928 1970 aaKnown RBP12.64□□□□□ -0.39
SS18-213ENST00000579640 AK2P54819 239 aa12.64□□□□□ -0.39
SS18-213ENST00000579640 CERKLQ49MI3 558 aaPredicted RBP12.64□□□□□ -0.39
SS18-213ENST00000579640 PPP4R3BQ5MIZ7 849 aa12.64□□□□□ -0.39
SS18-213ENST00000579640 KRT26Q7Z3Y9 468 aa12.64□□□□□ -0.39
SS18-213ENST00000579640 TMTC2Q8N394 836 aa12.64□□□□□ -0.39
SS18-213ENST00000579640 NEDD1Q8NHV4 660 aa12.64□□□□□ -0.39
SS18-213ENST00000579640 ANGEL1Q9UNK9 670 aaKnown RBP12.64□□□□□ -0.39
SS18-213ENST00000579640 SH2B2O14492 632 aaPredicted RBP12.63□□□□□ -0.39
SS18-213ENST00000579640 IFIT3O14879 490 aaKnown RBP12.63□□□□□ -0.39
SS18-213ENST00000579640 LIFRP42702 1097 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 COL9A3Q14050 684 aaPredicted RBP12.63□□□□□ -0.39
SS18-213ENST00000579640 TMEM67Q5HYA8 995 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 FAM47AQ5JRC9 791 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 CDC37L1Q7L3B6 337 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 CHST3Q7LGC8 479 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 LDHDQ86WU2 507 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 TCEANC2Q96MN5 208 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 ZSCAN10Q96SZ4 725 aaPredicted RBP12.63□□□□□ -0.39
SS18-213ENST00000579640 SCAF8Q9UPN6 1271 aaKnown RBP12.63□□□□□ -0.39
SS18-213ENST00000579640 CLEC11AQ9Y240 323 aa12.63□□□□□ -0.39
SS18-213ENST00000579640 TOB2Q14106 344 aaPredicted RBP12.62□□□□□ -0.39
SS18-213ENST00000579640 WTAPQ15007 396 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 NBPF12Q5TAG4 269 aaPredicted RBP12.62□□□□□ -0.39
SS18-213ENST00000579640 CDAN1Q8IWY9 1227 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 NKX2-3Q8TAU0 364 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 IGDCC4Q8TDY8 1250 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 ZSCAN31Q96LW9 406 aaPredicted RBP12.62□□□□□ -0.39
SS18-213ENST00000579640 ZNF341Q9BYN7 854 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 LRRC2Q9BYS8 371 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 GINM1Q9NU53 330 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 LIMCH1Q9UPQ0 1083 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 TNKSO95271 1327 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 FAM196BA6NMK8 535 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 AKR1B1P15121 316 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 SGMS1Q86VZ5 419 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 DGKHQ86XP1 1220 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 BRF1Q92994 677 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 CABP5Q9NP86 173 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 NMRK2Q9NPI5 230 aa12.62□□□□□ -0.39
SS18-213ENST00000579640 GREB1LQ9C091 1923 aaPredicted RBP12.61□□□□□ -0.39
SS18-213ENST00000579640 ADM5C9JUS6 153 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 K7ELQ4 463 aaPredicted RBP12.61□□□□□ -0.39
SS18-213ENST00000579640 CD2BP2O95400 341 aaKnown RBP12.61□□□□□ -0.39
SS18-213ENST00000579640 NF2P35240 595 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 EVCP57679 992 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 SEC23AQ15436 765 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 ABCB5Q2M3G0 1257 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 TMEM179Q6ZVK1 233 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 MIGA2Q7L4E1 593 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 USP48Q86UV5 1035 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 ANKS1AQ92625 1134 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 ZKSCAN3Q9BRR0 538 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 TBC1D2Q9BYX2 928 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 LY9Q9HBG7 655 aa12.61□□□□□ -0.39
SS18-213ENST00000579640 SH2B1Q9NRF2 756 aaPredicted RBP12.61□□□□□ -0.39
SS18-213ENST00000579640 IGKV6D-41A0A0C4DH26 115 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 MPHOSPH10O00566 681 aaKnown RBP12.6□□□□□ -0.39
SS18-213ENST00000579640 IFIT1BQ5T764 474 aaKnown RBP12.6□□□□□ -0.39
SS18-213ENST00000579640 ENAHQ8N8S7 591 aaPredicted RBP12.6□□□□□ -0.39
SS18-213ENST00000579640 ZNF526Q8TF50 670 aaPredicted RBP12.6□□□□□ -0.39
SS18-213ENST00000579640 CDCA5Q96FF9 252 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 IL17RBQ9NRM6 502 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 ZNF112Q9UJU3 913 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 CCDC69A6NI79 296 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 CTNND1O60716 968 aaKnown RBP12.6□□□□□ -0.39
SS18-213ENST00000579640 SLURP2P0DP57 97 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 CAP2P40123 477 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 NOVP48745 357 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 RCAN1P53805 252 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 PRAMEF18Q5VWM3 479 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 SYNE3Q6ZMZ3 975 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 NFXL1Q6ZNB6 911 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 CHMP4CQ96CF2 233 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 ZNF274Q96GC6 653 aaPredicted RBP12.6□□□□□ -0.39
SS18-213ENST00000579640 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.6□□□□□ -0.39
SS18-213ENST00000579640 GLIS2Q9BZE0 524 aaPredicted RBP12.6□□□□□ -0.39
SS18-213ENST00000579640 KANSL2Q9H9L4 492 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 SSC5DA1L4H1 1573 aa12.6□□□□□ -0.39
SS18-213ENST00000579640 PHF20L1A8MW92 1017 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 PPP1R12BO60237 982 aaPredicted RBP12.59□□□□□ -0.39
SS18-213ENST00000579640 GDF11O95390 407 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 ASNSP08243 561 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 POTEIP0CG38 1075 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 POTEJP0CG39 1038 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 APOBRQ0VD83 1088 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 NOL8Q76FK4 1167 aaKnown RBP12.59□□□□□ -0.39
SS18-213ENST00000579640 CEP95Q96GE4 821 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 GPBP1L1Q9HC44 474 aaPredicted RBP12.59□□□□□ -0.39
SS18-213ENST00000579640 GPHNQ9NQX3 736 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms