RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RNF113AO15541 343 aaKnown RBP15.15■□□□□ 0.02
CLK3-206ENST00000562078 PDE8AO60658 829 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 STK3Q13188 491 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 ANKRD1Q15327 319 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 PARP10Q53GL7 1025 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 SLC27A3Q5K4L6 730 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 SUSD4Q5VX71 490 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 CPLX2Q6PUV4 134 aaKnown RBP15.15■□□□□ 0.02
CLK3-206ENST00000562078 PI16Q6UXB8 463 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 NAT10Q9H0A0 1025 aaKnown RBP15.15■□□□□ 0.02
CLK3-206ENST00000562078 L1RE1Q9UN81 338 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 DPCR1Q3MIW9 517 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 CLEC4GQ6UXB4 293 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 HNRNPLLQ8WVV9 542 aaKnown RBP15.15■□□□□ 0.02
CLK3-206ENST00000562078 NEK1Q96PY6 1258 aa15.15■□□□□ 0.02
CLK3-206ENST00000562078 M0R2C6 588 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 KINO60870 393 aaKnown RBP15.14■□□□□ 0.01
CLK3-206ENST00000562078 HSP90B2PQ58FF3 399 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 BICDL1Q6ZP65 573 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 KIFC2Q96AC6 838 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 SRP68Q9UHB9 627 aaKnown RBP15.14■□□□□ 0.01
CLK3-206ENST00000562078 NARFQ9UHQ1 456 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 PPP2R2CQ9Y2T4 447 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 UBR3Q6ZT12 1888 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 APBA3O96018 575 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 FAM43BQ6ZT52 329 aaPredicted RBP15.14■□□□□ 0.01
CLK3-206ENST00000562078 STOX1Q6ZVD7 989 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 FAM71BQ8TC56 605 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 DSCC1Q9BVC3 393 aa15.14■□□□□ 0.01
CLK3-206ENST00000562078 PUF60Q9UHX1 559 aaKnown RBP15.14■□□□□ 0.01
CLK3-206ENST00000562078 RFC4P35249 363 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 ZAP70P43403 619 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 CHMP4BP1P59074 171 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 MAP2K1Q02750 393 aaPredicted RBP15.13■□□□□ 0.01
CLK3-206ENST00000562078 TRDNQ13061 729 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 RESTQ13127 1097 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 TRAPPC3LQ5T215 181 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 AMIGO3Q86WK7 504 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 ARHGEF1Q92888 912 aaKnown RBP15.13■□□□□ 0.01
CLK3-206ENST00000562078 ALDH8A1Q9H2A2 487 aaPredicted RBP15.13■□□□□ 0.01
CLK3-206ENST00000562078 TAF1P21675 1872 aa15.13■□□□□ 0.01
CLK3-206ENST00000562078 A0A0G2JLW4 131 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 ZSCAN12O43309 604 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 HSPD1P10809 573 aaKnown RBP15.12■□□□□ 0.01
CLK3-206ENST00000562078 CASP8Q14790 479 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 TXNRD1Q16881 649 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 GBP6Q6ZN66 633 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 TICAM2Q86XR7 235 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 VGLL2Q8N8G2 317 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 JAK2O60674 1132 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 CCDC73Q6ZRK6 1079 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 GIMAP7Q8NHV1 300 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 OSBP2Q969R2 916 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 LRRC2Q9BYS8 371 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 ABCC12Q96J65 1359 aa15.12■□□□□ 0.01
CLK3-206ENST00000562078 TNS1Q9HBL0 1735 aaKnown RBP15.12■□□□□ 0.01
CLK3-206ENST00000562078 ATP1A3P13637 1013 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 LMOD1P29536 600 aaPredicted RBP15.11■□□□□ 0.01
CLK3-206ENST00000562078 USP8P40818 1118 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 MCAMP43121 646 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 USP5P45974 858 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 BIRC2Q13490 618 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 WASHC4Q2M389 1173 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 Q6ZUG5 572 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 MIEF2Q96C03 454 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 FAM169AQ9Y6X4 670 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 DOCK2Q92608 1830 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 CHD4Q14839 1912 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 MYH15Q9Y2K3 1946 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 NTSR2O95665 410 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 CCT5P48643 541 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 SCRN1Q12765 414 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 TBC1D9BQ66K14 1250 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 ENGASEQ8NFI3 743 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 GNL3LQ9NVN8 582 aaKnown RBP15.11■□□□□ 0.01
CLK3-206ENST00000562078 A0A1B0GUL6 1792 aa15.11■□□□□ 0.01
CLK3-206ENST00000562078 LRRIQ3A6PVS8 624 aaPredicted RBP15.1■□□□□ 0.01
CLK3-206ENST00000562078 BIN1O00499 593 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 RNF40O75150 1001 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 WDHD1O75717 1129 aaPredicted RBP15.1■□□□□ 0.01
CLK3-206ENST00000562078 DHX8Q14562 1220 aaKnown RBP15.1■□□□□ 0.01
CLK3-206ENST00000562078 NBPF20Q3BBV1 942 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 DPF2Q92785 391 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 BRF1Q92994 677 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 FAXDC2Q96IV6 333 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 CFAP45Q9UL16 551 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 RAB21Q9UL25 225 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 C21orf2O43822 256 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 PDE8BO95263 885 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 FANCCQ00597 558 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 HELBQ8NG08 1087 aaPredicted RBP15.1■□□□□ 0.01
CLK3-206ENST00000562078 CCDC12Q8WUD4 166 aaPredicted RBP15.1■□□□□ 0.01
CLK3-206ENST00000562078 IRX2Q9BZI1 471 aaPredicted RBP15.1■□□□□ 0.01
CLK3-206ENST00000562078 FAM107BQ9H098 131 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 SLC24A3Q9HC58 644 aa15.1■□□□□ 0.01
CLK3-206ENST00000562078 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.09■□□□□ 0.01
CLK3-206ENST00000562078 RGL2O15211 777 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 ERLIN1O75477 346 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 ECM2O94769 699 aaPredicted RBP15.09■□□□□ 0.01
CLK3-206ENST00000562078 RHOXF2BP0C7M4 288 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms