RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ZKSCAN3Q9BRR0 538 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 LY9Q9HBG7 655 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 RNF181Q9P0P0 153 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 PCDHAC2Q9Y5I4 1007 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 MYH4Q9Y623 1939 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 CCDC196A0A1B0GTZ2 297 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 GOLGA8BA8MQT2 603 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 TCP10L2B9ZVM9 353 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 SMIM22K7EJ46 135 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 WNT10BO00744 389 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 CPLX1O14810 134 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 LARGE1O95461 756 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 RASA1P20936 1047 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 PDCP20941 246 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 RCAN1P53805 252 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 FAM47AQ5JRC9 791 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 RBM26Q5T8P6 1007 aaKnown RBP12.06□□□□□ -0.48
USP3-219ENST00000561326 C9orf131Q5VYM1 1079 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 DGKHQ86XP1 1220 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 ZBED3Q96IU2 234 aaPredicted RBP12.06□□□□□ -0.48
USP3-219ENST00000561326 CCDC17Q96LX7 622 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 VEZTQ9HBM0 779 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 GPHNQ9NQX3 736 aaPredicted RBP12.06□□□□□ -0.48
USP3-219ENST00000561326 TCP11L1Q9NUJ3 509 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 BRPF3Q9ULD4 1205 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 COL2A1P02458 1487 aaPredicted RBP12.06□□□□□ -0.48
USP3-219ENST00000561326 TNKSO95271 1327 aa12.06□□□□□ -0.48
USP3-219ENST00000561326 GOLGB1Q14789 3259 aaKnown RBP12.05□□□□□ -0.48
USP3-219ENST00000561326 CLRN2A0PK11 232 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 CDKL5O76039 1030 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 LMOD1P29536 600 aaPredicted RBP12.05□□□□□ -0.48
USP3-219ENST00000561326 DDIT3P35638 169 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 METAP2P50579 478 aaKnown RBP eCLIP12.05□□□□□ -0.48
USP3-219ENST00000561326 CCT2P78371 535 aaKnown RBP12.05□□□□□ -0.48
USP3-219ENST00000561326 HMGN5P82970 282 aaKnown RBP12.05□□□□□ -0.48
USP3-219ENST00000561326 GABPAQ06546 454 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 SEC23AQ15436 765 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 APOA5Q6Q788 366 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 ENAHQ8N8S7 591 aaPredicted RBP12.05□□□□□ -0.48
USP3-219ENST00000561326 NEDD1Q8NHV4 660 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 GPRC5DQ9NZD1 345 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 HERC5Q9UII4 1024 aaKnown RBP12.05□□□□□ -0.48
USP3-219ENST00000561326 ZNF541Q9H0D2 1346 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 ATRNL1Q5VV63 1379 aa12.05□□□□□ -0.48
USP3-219ENST00000561326 GJB2P29033 226 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 EVX2Q03828 476 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 SCRN1Q12765 414 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 KIF4BQ2VIQ3 1234 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 NBPF9Q3BBW0 867 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 ZFPM1Q8IX07 1006 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 FAM184AQ8NB25 1140 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 SLC44A5Q8NCS7 719 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 ANKS1AQ92625 1134 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 CSRNP1Q96S65 589 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 KAT14Q9H8E8 782 aa12.04□□□□□ -0.48
USP3-219ENST00000561326 ZC3H4Q9UPT8 1303 aaKnown RBP12.04□□□□□ -0.48
USP3-219ENST00000561326 DCAF8L1A6NGE4 600 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 DDTLA6NHG4 134 aaPredicted RBP12.03□□□□□ -0.48
USP3-219ENST00000561326 GOLGA8AA7E2F4 631 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 RTN1Q16799 776 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 CERKLQ49MI3 558 aaPredicted RBP12.03□□□□□ -0.48
USP3-219ENST00000561326 TBC1D10BQ4KMP7 808 aaPredicted RBP12.03□□□□□ -0.48
USP3-219ENST00000561326 SAMD7Q7Z3H4 446 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 METTL16Q86W50 562 aaKnown RBP12.03□□□□□ -0.48
USP3-219ENST00000561326 ZNF654Q8IZM8 581 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 FANCBQ8NB91 859 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 NKX2-3Q8TAU0 364 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 HOOK2Q96ED9 719 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.03□□□□□ -0.482e-6■■■□□ 18.4
USP3-219ENST00000561326 HPS5Q9UPZ3 1129 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 TCHHQ07283 1943 aa12.03□□□□□ -0.48
USP3-219ENST00000561326 SIPA1L1O43166 1804 aa12.02□□□□□ -0.48
USP3-219ENST00000561326 MPHOSPH10O00566 681 aaKnown RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 DDAH1O94760 285 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 KIF5BP33176 963 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 SHMT1P34896 483 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 LARP1BQ659C4 914 aaKnown RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 SH3BP5LQ7L8J4 393 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 MICU3Q86XE3 530 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 APOBEC3FQ8IUX4 373 aaKnown RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 CTCFLQ8NI51 663 aaPredicted RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 NUP133Q8WUM0 1156 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 MAP3K14Q99558 947 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 SENP2Q9HC62 589 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 NCOA5Q9HCD5 579 aaKnown RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 CABP5Q9NP86 173 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 RBM28Q9NW13 759 aaKnown RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 STX8Q9UNK0 236 aa12.02□□□□□ -0.49
USP3-219ENST00000561326 WDR33Q9C0J8 1336 aaKnown RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 BAZ2BQ9UIF8 2168 aaKnown RBP12.02□□□□□ -0.49
USP3-219ENST00000561326 SHTN1A0MZ66 631 aa12.01□□□□□ -0.49
USP3-219ENST00000561326 TBC1D12O60347 775 aa12.01□□□□□ -0.49
USP3-219ENST00000561326 NMT2O60551 498 aa12.01□□□□□ -0.49
USP3-219ENST00000561326 DDNO94850 711 aaPredicted RBP12.01□□□□□ -0.49
USP3-219ENST00000561326 TOP1P11387 765 aaKnown RBP12.01□□□□□ -0.49
USP3-219ENST00000561326 RASA3Q14644 834 aa12.01□□□□□ -0.49
USP3-219ENST00000561326 RAB3GAP1Q15042 981 aa12.01□□□□□ -0.49
USP3-219ENST00000561326 TATDN1Q6P1N9 297 aa12.01□□□□□ -0.49
USP3-219ENST00000561326 TRIM22Q8IYM9 498 aa12.01□□□□□ -0.49
USP3-219ENST00000561326 NSUN7Q8NE18 718 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms