RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	HPX	P02790	462 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	CELA3B	P08861	270 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	CYP7A1	P22680	504 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	NTF4	P34130	210 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	FCGRT	P55899	365 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	ERVFC1	P60507	584 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	ORC1	Q13415	861 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	GRM2	Q14416	872 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	RALGPS1	Q5JS13	557 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	ZBTB37	Q5TC79	503 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	TMPRSS7	Q7RTY8	843 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	IRF2BP1	Q8IU81	584 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	KRTAP9-8	Q9BYQ0	159 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	MCOLN1	Q9GZU1	580 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	SLC6A17	Q9H1V8	727 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	ANO2	Q9NQ90	1003 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	SAMM50	Q9Y512	469 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	CAPN6	Q9Y6Q1	641 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	SUPT5H	O00267	1087 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	NDUFB5	O43674	189 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	PSPN	O60542	156 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	SLITRK5	O94991	958 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	CBX7	O95931	251 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	ADRB1	P08588	477 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	RING1	Q06587	406 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	ZNF605	Q86T29	641 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	OXR1	Q8N573	874 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	MFSD2A	Q8NA29	543 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	STK35	Q8TDR2	534 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	COX4I2	Q96KJ9	171 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	ADAMTS10	Q9H324	1103 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	NLRP2	Q9NX02	1062 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	KCTD3	Q9Y597	815 aa		4.07	□□□□□ -1.76
SPG11-223	ENST00000560858	TEX51	A0A1B0GUA7	166 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	EIF1AY	O14602	144 aa	Known RBP	4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	TRIM13	O60858	407 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	ZNF252P-AS1	Q0IIN9	211 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	ZXDC	Q2QGD7	858 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	SKOR2	Q2VWA4	1001 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	UBE3D	Q7Z6J8	389 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	LILRA2	Q8N149	483 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	SYTL4	Q96C24	671 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	CITED4	Q96RK1	184 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	MIPEP	Q99797	713 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	RNF32	Q9H0A6	362 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	CACNA2D2	Q9NY47	1150 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	AKAP2	Q9Y2D5	859 aa		4.06	□□□□□ -1.76
SPG11-223	ENST00000560858	TRIM37	O94972	964 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	KIR3DL1	P43629	444 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	ZNF211	Q13398	564 aa	Predicted RBP	4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	PDZD8	Q8NEN9	1154 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	TMC1	Q8TDI8	760 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	EPS8L3	Q8TE67	593 aa	Known RBP	4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	ELMO3	Q96BJ8	720 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	CCDC97	Q96F63	343 aa	Predicted RBP	4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	XYLT2	Q9H1B5	865 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	ZNF552	Q9H707	407 aa	Predicted RBP	4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	CWC22	Q9HCG8	908 aa	Known RBP	4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	PCDHA4	Q9UN74	947 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	SCRIB	Q14160	1630 aa		4.05	□□□□□ -1.76
SPG11-223	ENST00000560858	MYOCOS	A0A1B0GUC4	107 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	ICMT	O60725	284 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	TRHR	P34981	398 aa	Predicted RBP	4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	PDE6B	P35913	854 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	NFKB2	Q00653	900 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	LRRC14	Q15048	493 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	SCARA3	Q6AZY7	606 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	LETMD1	Q6P1Q0	360 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	MPRIP	Q6WCQ1	1025 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	CREG2	Q8IUH2	290 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	GRIN3A	Q8TCU5	1115 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	DHX38	Q92620	1227 aa	Known RBP	4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	NIF3L1	Q9GZT8	377 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	C19orf44	Q9H6X5	657 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	SERPINA10	Q9UK55	444 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	RB1CC1	Q8TDY2	1594 aa		4.04	□□□□□ -1.76
SPG11-223	ENST00000560858	EIF4G1	Q04637	1599 aa	Known RBP	4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	FITM1	A5D6W6	292 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	OTOL1	A6NHN0	477 aa	Predicted RBP	4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	ESR1	P03372	595 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	SPPL2C	Q8IUH8	684 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	GLYCTK	Q8IVS8	523 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	RIN3	Q8TB24	985 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	PIWIL2	Q8TC59	973 aa	Known RBP	4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	FAM129B	Q96TA1	746 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	SGPP1	Q9BX95	441 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	CEP44	Q9C0F1	390 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	EGFL7	Q9UHF1	273 aa		4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	YBX2	Q9Y2T7	364 aa	Known RBP	4.03	□□□□□ -1.76
SPG11-223	ENST00000560858	NACAD	O15069	1562 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	PRAMEF27	A3QJZ7	478 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	TMEM88B	A6NKF7	163 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	BMP6	P22004	513 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	CAP2	P40123	477 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	KRTAP10-2	P60368	255 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	TNK2	Q07912	1038 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	SLBP	Q14493	270 aa	Known RBP eCLIP	4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	SNX17	Q15036	470 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	NR0B2	Q15466	257 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	LLGL2	Q6P1M3	1020 aa		4.02	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 177.3 ms