RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FXR1P51114 621 aaKnown RBP eCLIP14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 MORC3Q14149 939 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 LRRC24Q50LG9 513 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 SPATA1Q5VX52 437 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 TTC19Q6DKK2 380 aaPredicted RBP14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 KIAA1328Q86T90 577 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 DIS3L2Q8IYB7 885 aaKnown RBP14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 MAP3K14Q99558 947 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 KIAA0754O94854 1291 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 IPO7O95373 1038 aaKnown RBP14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 CASP1P29466 404 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 KRT9P35527 623 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 GGCXP38435 758 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 TMEM67Q5HYA8 995 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 CYP26C1Q6V0L0 522 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 NOSTRINQ8IVI9 506 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 TRIM22Q8IYM9 498 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 HDAC6Q9UBN7 1215 aa14.52□□□□□ -0.09
SFSWAP-209ENST00000540469 GOLGA6BA6NDN3 693 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 GPAA1O43292 621 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 INPP5BP32019 993 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 MAP2K2P36507 400 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 TRIML1Q8N9V2 468 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 FAM169AQ9Y6X4 670 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 UBE2Q2LH0YL09 131 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 ERCC5P28715 1186 aaPredicted RBP14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 CDC25AP30304 524 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 RRP12Q5JTH9 1297 aaKnown RBP14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 DENND2AQ9ULE3 1009 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 SLC12A7Q9Y666 1083 aa14.51□□□□□ -0.09
SFSWAP-209ENST00000540469 SRGAP2O75044 1071 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 FBXW10Q5XX13 1052 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 APOA5Q6Q788 366 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 STAMQ92783 540 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 HPCAL4Q9UM19 191 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 CTNND2Q9UQB3 1225 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 SLIT1O75093 1534 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 ZFYP08048 801 aaPredicted RBP14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 MSL3Q8N5Y2 521 aaKnown RBP14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 PUS7LQ9H0K6 701 aaKnown RBP14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 TRIM10Q9UDY6 481 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 CCDC122Q5T0U0 273 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 CCDC51Q96ER9 411 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 JADE2Q9NQC1 790 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 TAB2Q9NYJ8 693 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 ZNF330Q9Y3S2 320 aaPredicted RBP14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 SAMM50Q9Y512 469 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 SAR1BQ9Y6B6 198 aa14.5□□□□□ -0.09
SFSWAP-209ENST00000540469 IFIT3O14879 490 aaKnown RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 GYPCP04921 128 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 GNGT1P63211 74 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 WASF1Q92558 559 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 APPBP2Q92624 585 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 ZNF496Q96IT1 587 aaPredicted RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 KAT14Q9H8E8 782 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 CEP131Q9UPN4 1083 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 NWD1Q149M9 1564 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 PATL2C9JE40 543 aaKnown RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 SYF2O95926 243 aaKnown RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 USP14P54578 494 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 USP49Q70CQ1 688 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 CNPY4Q8N129 248 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 COG1Q8WTW3 980 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 CAPS2Q9BXY5 557 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 MYO1AQ9UBC5 1043 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 EYA2O00167 538 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 EXOC5O00471 708 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 IDH1O75874 414 aaKnown RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 CKAP4Q07065 602 aaKnown RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 RABL6Q3YEC7 729 aaPredicted RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 WDR93Q6P2C0 686 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 VIPAS39Q9H9C1 493 aa14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 ADD3Q9UEY8 706 aaKnown RBP14.49□□□□□ -0.09
SFSWAP-209ENST00000540469 LAMA4Q16363 1823 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 MATR3P43243 847 aaKnown RBP eCLIP14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 MDM2Q00987 491 aaPredicted RBP14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 RILPL1Q5EBL4 403 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 NUP133Q8WUM0 1156 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 RAPGEF4Q8WZA2 1011 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 CSRNP2Q9H175 543 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 SENP2Q9HC62 589 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 ABHD10Q9NUJ1 306 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 PHF8Q9UPP1 1060 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 PCDHB6Q9Y5E3 794 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 ADAMTS13Q76LX8 1427 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 ZAP70P43403 619 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 ERVK-24P63145 666 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 RRAGBQ5VZM2 374 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 SND1Q7KZF4 910 aaKnown RBP eCLIP14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 MMS19Q96T76 1030 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.48□□□□□ -0.091e-10■□□□□ 9
SFSWAP-209ENST00000540469 CDHR2Q9BYE9 1310 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 FAM237AA0A1B0GTK4 181 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 PTPREP23469 700 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 RDXP35241 583 aaKnown RBP14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 FKBP15Q5T1M5 1219 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 PI16Q6UXB8 463 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 CYB5R4Q7L1T6 521 aa14.48□□□□□ -0.09
SFSWAP-209ENST00000540469 ATG9AQ7Z3C6 839 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms