RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PI4KBQ9UBF8 816 aa24.61■■□□□ 1.53
VPS28-208ENST00000527797 MYH1P12882 1939 aa24.61■■□□□ 1.53
VPS28-208ENST00000527797 CLRN2A0PK11 232 aa24.61■■□□□ 1.53
VPS28-208ENST00000527797 TAOK2Q9UL54 1235 aa24.61■■□□□ 1.53
VPS28-208ENST00000527797 ECM29Q5VYK3 1845 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 DDTLA6NHG4 134 aaPredicted RBP24.6■■□□□ 1.53
VPS28-208ENST00000527797 GOLGA8AA7E2F4 631 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 CPLX1O14810 134 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 RCAN1P53805 252 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 PKP1Q13835 747 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 MICU3Q86XE3 530 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 MICALL2Q8IY33 904 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 NSUN7Q8NE18 718 aaKnown RBP24.6■■□□□ 1.53
VPS28-208ENST00000527797 SMARCC2Q8TAQ2 1214 aa24.6■■□□□ 1.53
VPS28-208ENST00000527797 SHTN1A0MZ66 631 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 TCP10L2B9ZVM9 353 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 NMT2O60551 498 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 JAK2O60674 1132 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 DTNBO60941 627 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 CTDNEP1O95476 244 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 HMGN5P82970 282 aaKnown RBP24.59■■□□□ 1.53
VPS28-208ENST00000527797 FKBP1CQ5VVH2 108 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 SH3BP5LQ7L8J4 393 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 DGKHQ86XP1 1220 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 ZNF654Q8IZM8 581 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 MYL10Q9BUA6 226 aa24.59■■□□□ 1.53
VPS28-208ENST00000527797 CNOT7Q9UIV1 285 aaKnown RBP24.59■■□□□ 1.53
VPS28-208ENST00000527797 PTPDC1A2A3K4 754 aa24.58■■□□□ 1.53
VPS28-208ENST00000527797 WNT10BO00744 389 aa24.58■■□□□ 1.53
VPS28-208ENST00000527797 PDIA4P13667 645 aaKnown RBP24.58■■□□□ 1.53
VPS28-208ENST00000527797 PDCP20941 246 aa24.58■■□□□ 1.53
VPS28-208ENST00000527797 CATIPQ7Z7H3 387 aa24.58■■□□□ 1.53
VPS28-208ENST00000527797 FOXP4Q8IVH2 680 aaPredicted RBP24.58■■□□□ 1.53
VPS28-208ENST00000527797 CRACR2BQ8N4Y2 399 aaPredicted RBP24.58■■□□□ 1.53
VPS28-208ENST00000527797 NEDD1Q8NHV4 660 aa24.58■■□□□ 1.53
VPS28-208ENST00000527797 TNPO1Q92973 898 aaKnown RBP24.58■■□□□ 1.53
VPS28-208ENST00000527797 ATRNL1Q5VV63 1379 aa24.58■■□□□ 1.52
VPS28-208ENST00000527797 BRD1O95696 1058 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 RXRAP19793 462 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 SYT1P21579 422 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 CPLX2Q6PUV4 134 aaKnown RBP24.57■■□□□ 1.52
VPS28-208ENST00000527797 FAM151AQ8WW52 585 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 ANKS1AQ92625 1134 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 VEZTQ9HBM0 779 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 IL17RBQ9NRM6 502 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 ZDHHC9Q9Y397 364 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 COL2A1P02458 1487 aaPredicted RBP24.57■■□□□ 1.52
VPS28-208ENST00000527797 WDR33Q9C0J8 1336 aaKnown RBP24.57■■□□□ 1.52
VPS28-208ENST00000527797 NBPF9Q3BBW0 867 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 RBM26Q5T8P6 1007 aaKnown RBP24.57■■□□□ 1.52
VPS28-208ENST00000527797 LARP1BQ659C4 914 aaKnown RBP24.57■■□□□ 1.52
VPS28-208ENST00000527797 GPC2Q8N158 579 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 FAM184AQ8NB25 1140 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 DDX11Q96FC9 970 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 TRIM34Q9BYJ4 488 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 RNF181Q9P0P0 153 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 KIF3AQ9Y496 699 aa24.57■■□□□ 1.52
VPS28-208ENST00000527797 NID2Q14112 1375 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 STX6O43752 255 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 CDKL5O76039 1030 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 CALM1P0DP23 149 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 CALM2P0DP24 149 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 CALM3P0DP25 149 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 CCDC144CPQ8IYA2 1237 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 NUP133Q8WUM0 1156 aa24.56■■□□□ 1.52
VPS28-208ENST00000527797 H7C1D1 291 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 DDAH1O94760 285 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 SHMT1P34896 483 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 ADD1P35611 737 aaKnown RBP24.55■■□□□ 1.52
VPS28-208ENST00000527797 PPP2R5BQ15173 497 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 RTN1Q16799 776 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 RCSD1Q6JBY9 416 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 FANCBQ8NB91 859 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 KAT14Q9H8E8 782 aa24.55■■□□□ 1.52
VPS28-208ENST00000527797 CCDC196A0A1B0GTZ2 297 aa24.54■■□□□ 1.52
VPS28-208ENST00000527797 CDC27P30260 824 aa24.54■■□□□ 1.52
VPS28-208ENST00000527797 FAM83AQ86UY5 434 aa24.54■■□□□ 1.52
VPS28-208ENST00000527797 GPR162Q16538 588 aa24.53■■□□□ 1.52
VPS28-208ENST00000527797 SAMD7Q7Z3H4 446 aa24.53■■□□□ 1.52
VPS28-208ENST00000527797 METTL16Q86W50 562 aaKnown RBP24.53■■□□□ 1.52
VPS28-208ENST00000527797 CCDC17Q96LX7 622 aa24.53■■□□□ 1.52
VPS28-208ENST00000527797 CSRNP1Q96S65 589 aa24.53■■□□□ 1.52
VPS28-208ENST00000527797 FAM217BQ9NTX9 383 aaPredicted RBP24.53■■□□□ 1.52
VPS28-208ENST00000527797 TNNI2P48788 182 aa24.53■■□□□ 1.52
VPS28-208ENST00000527797 CNTNAP1P78357 1384 aa24.53■■□□□ 1.52
VPS28-208ENST00000527797 PLIN4Q96Q06 1357 aa24.53■■□□□ 1.52
VPS28-208ENST00000527797 EGFRP00533 1210 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 AKR1B1P15121 316 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 TROAPQ12815 778 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 NFKBIBQ15653 356 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 KIF4BQ2VIQ3 1234 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 TBC1D10BQ4KMP7 808 aaPredicted RBP24.52■■□□□ 1.52
VPS28-208ENST00000527797 FOXD4L5Q5VV16 416 aaPredicted RBP24.52■■□□□ 1.52
VPS28-208ENST00000527797 C9orf131Q5VYM1 1079 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 FOXD4L4Q8WXT5 416 aaPredicted RBP24.52■■□□□ 1.52
VPS28-208ENST00000527797 DNAJC18Q9H819 358 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 GPRC5DQ9NZD1 345 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 STX8Q9UNK0 236 aa24.52■■□□□ 1.52
VPS28-208ENST00000527797 ZSCAN22P10073 491 aaPredicted RBP24.51■■□□□ 1.51
VPS28-208ENST00000527797 GBP4Q96PP9 640 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms