RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 FOXQ1Q9C009 403 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 GINM1Q9NU53 330 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 FAM170BA6NMN3 283 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 UPK3BL1B0FP48 263 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 WDR64B1ANS9 1081 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 UPK3BL2E5RIL1 263 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 DNAJA2O60884 412 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 ADAM23O75077 832 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 PRAMEF13Q5VWM6 474 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 OGFOD3Q6PK18 319 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 ZDHHC13Q8IUH4 622 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 SPATA32Q96LK8 384 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 DUSP23Q9BVJ7 150 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 CAPN10Q9HC96 672 aa7.12□□□□□ -1.27
CD44-215ENST00000525241 CHURC1-FNTBB4DL54 471 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 LEFTY1O75610 366 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 FAM87AP0C7U9 286 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 SOX9P48436 509 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 COL9A2Q14055 689 aaPredicted RBP7.11□□□□□ -1.27
CD44-215ENST00000525241 ZNF765Q7L2R6 523 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 TOP6BLQ8N6T0 577 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 DPH2Q9BQC3 489 aaPredicted RBP7.11□□□□□ -1.27
CD44-215ENST00000525241 TINF2Q9BSI4 451 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 PRDM10Q9NQV6 1147 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 EFR3BQ9Y2G0 817 aa7.11□□□□□ -1.27
CD44-215ENST00000525241 PRR19A6NJB7 356 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 SLC22A31A6NKX4 558 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 SLITRK5O94991 958 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 SLFN12Q8IYM2 578 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 MFSD2AQ8NA29 543 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 FAM13CQ8NE31 585 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 GIMAP7Q8NHV1 300 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 ZNRF3Q9ULT6 936 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 PPT2Q9UMR5 302 aa7.1□□□□□ -1.27
CD44-215ENST00000525241 ATF4P18848 351 aaPredicted RBP7.09□□□□□ -1.27
CD44-215ENST00000525241 YARSP54577 528 aaKnown RBP7.09□□□□□ -1.27
CD44-215ENST00000525241 CYP27A1Q02318 531 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 FAM214BQ7L5A3 538 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 RIN3Q8TB24 985 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 XAGE3Q8WTP9 111 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 SEC16BQ96JE7 1060 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 ANTXR1Q9H6X2 564 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 ATG3Q9NT62 314 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 GMIPQ9P107 970 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 KLHL3Q9UH77 587 aa7.09□□□□□ -1.27
CD44-215ENST00000525241 EOMESO95936 686 aa7.08□□□□□ -1.28
CD44-215ENST00000525241 NASPP49321 788 aaPredicted RBP7.08□□□□□ -1.28
CD44-215ENST00000525241 ZC3H6P61129 1189 aaKnown RBP7.08□□□□□ -1.28
CD44-215ENST00000525241 MLECQ14165 292 aa7.08□□□□□ -1.28
CD44-215ENST00000525241 DUSP27Q5VZP5 1158 aa7.08□□□□□ -1.28
CD44-215ENST00000525241 MIPEPQ99797 713 aa7.08□□□□□ -1.28
CD44-215ENST00000525241 METTL22Q9BUU2 404 aaPredicted RBP7.08□□□□□ -1.28
CD44-215ENST00000525241 OSBPL1AQ9BXW6 950 aa7.08□□□□□ -1.28
CD44-215ENST00000525241 MEIS3P2A8K0S8 358 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 TGFB1P01137 390 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 CPSF6Q16630 551 aaKnown RBP eCLIP7.07□□□□□ -1.28
CD44-215ENST00000525241 LRRFIP1Q32MZ4 808 aaKnown RBP7.07□□□□□ -1.28
CD44-215ENST00000525241 CYP27C1Q4G0S4 372 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 ARSHQ5FYA8 562 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 CDCP2Q5VXM1 449 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 OVOS1Q6IE37 1185 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 LETMD1Q6P1Q0 360 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 SLC43A3Q8NBI5 491 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 PPP1R13LQ8WUF5 828 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 TMEM40Q8WWA1 233 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 ATG4CQ96DT6 458 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 HEXIM2Q96MH2 286 aaKnown RBP7.07□□□□□ -1.28
CD44-215ENST00000525241 FERD3LQ96RJ6 166 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 CNNM2Q9H8M5 875 aa7.07□□□□□ -1.28
CD44-215ENST00000525241 CNTNAP4Q9C0A0 1308 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 IMPDH2P12268 514 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 GNL2Q13823 731 aaKnown RBP7.06□□□□□ -1.28
CD44-215ENST00000525241 CCDC81Q6ZN84 652 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 RBBP8NLQ8NC74 664 aaPredicted RBP7.06□□□□□ -1.28
CD44-215ENST00000525241 DNAJB8Q8NHS0 232 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 CYB5D2Q8WUJ1 264 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 PIM2Q9P1W9 311 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 RNF112Q9ULX5 631 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 LEMD3Q9Y2U8 911 aa7.06□□□□□ -1.28
CD44-215ENST00000525241 NAALADL2Q58DX5 795 aa7.05□□□□□ -1.28
CD44-215ENST00000525241 CDH24Q86UP0 819 aa7.05□□□□□ -1.28
CD44-215ENST00000525241 VPS37DQ86XT2 251 aa7.05□□□□□ -1.28
CD44-215ENST00000525241 BAHD1Q8TBE0 780 aaPredicted RBP7.05□□□□□ -1.28
CD44-215ENST00000525241 C8orf37Q96NL8 207 aa7.05□□□□□ -1.28
CD44-215ENST00000525241 GMLQ99445 158 aa7.05□□□□□ -1.28
CD44-215ENST00000525241 CEP131Q9UPN4 1083 aa7.05□□□□□ -1.28
CD44-215ENST00000525241 U3KQE9 123 aa7.05□□□□□ -1.28
CD44-215ENST00000525241 RBAK-RBAKDNI3L0D1 243 aa7.04□□□□□ -1.28
CD44-215ENST00000525241 RGS13O14921 159 aa7.04□□□□□ -1.28
CD44-215ENST00000525241 NME1P15531 152 aaKnown RBP7.04□□□□□ -1.28
CD44-215ENST00000525241 HOXA10P31260 410 aaPredicted RBP7.04□□□□□ -1.28
CD44-215ENST00000525241 FBXW10Q5XX13 1052 aa7.04□□□□□ -1.28
CD44-215ENST00000525241 NLRC3Q7RTR2 1065 aa7.04□□□□□ -1.28
CD44-215ENST00000525241 SHDQ96IW2 340 aa7.04□□□□□ -1.28
CD44-215ENST00000525241 CCDC74BQ96LY2 380 aa7.04□□□□□ -1.28
CD44-215ENST00000525241 KIF2CQ99661 725 aa7.04□□□□□ -1.28
CD44-215ENST00000525241 SRRTQ9BXP5 876 aaKnown RBP7.04□□□□□ -1.28
CD44-215ENST00000525241 COL17A1Q9UMD9 1497 aaPredicted RBP7.04□□□□□ -1.28
CD44-215ENST00000525241 IGF2BP3O00425 579 aaKnown RBP eCLIP7.03□□□□□ -1.28
CD44-215ENST00000525241 TNFRSF10CO14798 259 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 268.2 ms