RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 PCDHAC2Q9Y5I4 1007 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 H3BQV1 296 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 PRPF40AO75400 957 aaKnown RBP11.02□□□□□ -0.65
SF3B1-211ENST00000487698 DDAH1O94760 285 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 CDK8P49336 464 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 TFAP4Q01664 338 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 GABPAQ06546 454 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 TROAPQ12815 778 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 PICALMQ13492 652 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 PPP2R5BQ15173 497 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 RTN1Q16799 776 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 KLHL40Q2TBA0 621 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 IFFO2Q5TF58 517 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 RSBN1LQ6PCB5 846 aaPredicted RBP11.02□□□□□ -0.65
SF3B1-211ENST00000487698 CPLX2Q6PUV4 134 aaKnown RBP11.02□□□□□ -0.65
SF3B1-211ENST00000487698 FANCBQ8NB91 859 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 PLIN4Q96Q06 1357 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 IDI2Q9BXS1 227 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 OSBPL5Q9H0X9 879 aaPredicted RBP11.02□□□□□ -0.65
SF3B1-211ENST00000487698 IL17RBQ9NRM6 502 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 CNPY2Q9Y2B0 182 aa11.02□□□□□ -0.65
SF3B1-211ENST00000487698 COL2A1P02458 1487 aaPredicted RBP11.01□□□□□ -0.65
SF3B1-211ENST00000487698 NFKBIEO00221 500 aa11.01□□□□□ -0.65
SF3B1-211ENST00000487698 PSMD14O00487 310 aa11.01□□□□□ -0.65
SF3B1-211ENST00000487698 NPM3O75607 178 aaKnown RBP11.01□□□□□ -0.65
SF3B1-211ENST00000487698 DNM1Q05193 864 aaKnown RBP11.01□□□□□ -0.65
SF3B1-211ENST00000487698 NFIAQ12857 509 aa11.01□□□□□ -0.65
SF3B1-211ENST00000487698 FOXD4L6Q3SYB3 417 aaPredicted RBP11.01□□□□□ -0.65
SF3B1-211ENST00000487698 FOXD4L3Q6VB84 417 aaPredicted RBP11.01□□□□□ -0.65
SF3B1-211ENST00000487698 DGKHQ86XP1 1220 aa11.01□□□□□ -0.65
SF3B1-211ENST00000487698 TAOK3Q9H2K8 898 aa11.01□□□□□ -0.65
SF3B1-211ENST00000487698 MKNK2Q9HBH9 465 aa11.01□□□□□ -0.65
SF3B1-211ENST00000487698 ZNRF3Q9ULT6 936 aa11.01□□□□□ -0.65
SF3B1-211ENST00000487698 LTBP3Q9NS15 1303 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 CCDC196A0A1B0GTZ2 297 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 FMNL1O95466 1100 aaPredicted RBP11□□□□□ -0.65
SF3B1-211ENST00000487698 CALM1P0DP23 149 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 CALM2P0DP24 149 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 CALM3P0DP25 149 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 CCDC178Q5BJE1 867 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 CATIPQ7Z7H3 387 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 NBPF11Q86T75 865 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 TTC6Q86TZ1 520 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 FBXO18Q8NFZ0 1043 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 PHKBQ93100 1093 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 ZSCAN16Q9H4T2 348 aaPredicted RBP11□□□□□ -0.65
SF3B1-211ENST00000487698 PPP1R1BQ9UD71 204 aaPredicted RBP11□□□□□ -0.65
SF3B1-211ENST00000487698 RAD17O75943 681 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 NIM1KQ8IY84 436 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 ZNF444Q8N0Y2 327 aaPredicted RBP11□□□□□ -0.65
SF3B1-211ENST00000487698 C8orf76Q96K31 380 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 GDPD2Q9HCC8 539 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 FAM198AQ9UFP1 575 aa11□□□□□ -0.65
SF3B1-211ENST00000487698 DICER1Q9UPY3 1922 aaKnown RBP11□□□□□ -0.65
SF3B1-211ENST00000487698 TSPY3P0CV98 308 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 TSPY8P0CW00 308 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 NOVP48745 357 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 FOSBP53539 338 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 FUT2Q10981 343 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 CFAP100Q494V2 611 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 FAM173BQ6P4H8 233 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 USP48Q86UV5 1035 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 CRACR2BQ8N4Y2 399 aaPredicted RBP10.99□□□□□ -0.65
SF3B1-211ENST00000487698 NEDD1Q8NHV4 660 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 GPT2Q8TD30 523 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 NUP133Q8WUM0 1156 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 AIFM3Q96NN9 605 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 EHD4Q9H223 541 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 RBM28Q9NW13 759 aaKnown RBP10.99□□□□□ -0.65
SF3B1-211ENST00000487698 MYH4Q9Y623 1939 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 RBM5P52756 815 aaKnown RBP eCLIP10.99□□□□□ -0.65
SF3B1-211ENST00000487698 SSRP1Q08945 709 aaKnown RBP10.99□□□□□ -0.65
SF3B1-211ENST00000487698 GSE1Q14687 1217 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 AGBL3Q8NEM8 1001 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 ALG1Q9BT22 464 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 SWAP70Q9UH65 585 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 SERPINB13Q9UIV8 391 aa10.99□□□□□ -0.65
SF3B1-211ENST00000487698 DDX49Q9Y6V7 483 aaKnown RBP10.99□□□□□ -0.65
SF3B1-211ENST00000487698 ATRNL1Q5VV63 1379 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 ELP1O95163 1332 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 BAZ2BQ9UIF8 2168 aaKnown RBP10.98□□□□□ -0.65
SF3B1-211ENST00000487698 SPDYE2BA6NHP3 402 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 UBE2Q2LH0YL09 131 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 FIBPO43427 364 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 SPDYE6P0CI01 402 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 CACNB3P54284 484 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 KRT85P78386 507 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 GUCY1B3Q02153 619 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 CXCL9Q07325 125 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 OTUD7BQ6GQQ9 843 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 TMTC3Q6ZXV5 915 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 ZFPM1Q8IX07 1006 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 KLHL34Q8N239 644 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 NLGN2Q8NFZ4 835 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 PRMT6Q96LA8 375 aaPredicted RBP10.98□□□□□ -0.65
SF3B1-211ENST00000487698 MAP3K14Q99558 947 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 SLC26A6Q9BXS9 759 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 RNF26Q9BY78 433 aaPredicted RBP10.98□□□□□ -0.65
SF3B1-211ENST00000487698 TAOK2Q9UL54 1235 aa10.98□□□□□ -0.65
SF3B1-211ENST00000487698 BCS1LQ9Y276 419 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms