RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 ABCB6Q9NP58 842 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 LZTFL1Q9NQ48 299 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 SAMSN1Q9NSI8 373 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 FAM217BQ9NTX9 383 aaPredicted RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 TBC1D2BQ9UPU7 963 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 CTAGE15A4D2H0 777 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 TRIM66O15016 1216 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 POLR2DO15514 142 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 MMP1P03956 469 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 CTAGE8P0CG41 777 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 ADORA1P30542 326 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 LIFRP42702 1097 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 ZAP70P43403 619 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 SSRP1Q08945 709 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 RBL2Q08999 1139 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 CASP8Q14790 479 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 SAFBQ15424 915 aaKnown RBP eCLIP8.3□□□□□ -1.084e-7■■■■□ 21.9
USP48-206ENST00000464577 KIF4BQ2VIQ3 1234 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 HSP90B2PQ58FF3 399 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 ZNF569Q5MCW4 686 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 WDR93Q6P2C0 686 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 CTAGE6Q86UF2 777 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 CTAGE4Q8IX94 777 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 IGDCC4Q8TDY8 1250 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 ZNF594Q96JF6 807 aaPredicted RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 NAPGQ99747 312 aaPredicted RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 PUS3Q9BZE2 481 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 IRX2Q9BZI1 471 aaPredicted RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 LY9Q9HBG7 655 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 ADD3Q9UEY8 706 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 PUF60Q9UHX1 559 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 CEP131Q9UPN4 1083 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 FAN1Q9Y2M0 1017 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 SRPRBQ9Y5M8 271 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 MYO5AQ9Y4I1 1855 aaKnown RBP8.29□□□□□ -1.08
USP48-206ENST00000464577 SYNRGQ9UMZ2 1314 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 NBPF26B4DH59 902 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 IFNAR1P17181 557 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 ADD2P35612 726 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 MAGEA9P43362 315 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 AARSP49588 968 aaKnown RBP eCLIP8.29□□□□□ -1.08
USP48-206ENST00000464577 TOB1P50616 345 aaPredicted RBP8.29□□□□□ -1.08
USP48-206ENST00000464577 CUL4BQ13620 913 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 SCARF1Q14162 830 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 ALX1Q15699 326 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 FILIP1LQ4L180 1135 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 HSP90AA4PQ58FG1 418 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 SLC9C2Q5TAH2 1124 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 NBPF14Q5TI25 921 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 NBPF10Q6P3W6 841 aaKnown RBP8.29□□□□□ -1.08
USP48-206ENST00000464577 MICU3Q86XE3 530 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 TMTC1Q8IUR5 882 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 NBPF15Q8N660 670 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 ZNF512BQ96KM6 892 aaPredicted RBP8.29□□□□□ -1.08
USP48-206ENST00000464577 ZSWIM4Q9H7M6 989 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 WWC3Q9ULE0 1092 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 UBR2Q8IWV8 1755 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 RIC1Q4ADV7 1423 aa8.29□□□□□ -1.08
USP48-206ENST00000464577 ALS2Q96Q42 1657 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 TEX33O43247 280 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 VSNL1P62760 191 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 TRIM14Q14142 442 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 TTF1Q15361 905 aaPredicted RBP8.28□□□□□ -1.08
USP48-206ENST00000464577 UBE3CQ15386 1083 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 ZNF827Q17R98 1081 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 DIS3L2Q8IYB7 885 aaKnown RBP8.28□□□□□ -1.08
USP48-206ENST00000464577 SLC35F6Q8N357 371 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 CTCFLQ8NI51 663 aaPredicted RBP8.28□□□□□ -1.08
USP48-206ENST00000464577 SLC26A6Q9BXS9 759 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 B4E1Z4 1266 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 MCM3P25205 808 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 ARHGAP25P42331 645 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 RCAN1P53805 252 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 AMPD2Q01433 879 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 GRIN1Q05586 938 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 CCDC57Q2TAC2 916 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 TMEM67Q5HYA8 995 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 NFXL1Q6ZNB6 911 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 TTLL7Q6ZT98 887 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 SH3RF1Q7Z6J0 888 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 PLA2G12BQ9BX93 195 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 SENP2Q9HC62 589 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 AATFQ9NY61 560 aaKnown RBP eCLIP8.28□□□□□ -1.08
USP48-206ENST00000464577 COL18A1P39060 1754 aa8.28□□□□□ -1.08
USP48-206ENST00000464577 PAPPAQ13219 1627 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 BTBD18B2RXH4 712 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 CYP27B1O15528 508 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 N4BP1O75113 896 aaKnown RBP8.27□□□□□ -1.09
USP48-206ENST00000464577 GYPCP04921 128 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 RXRAP19793 462 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 CORO7P57737 925 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 CABP4P57796 275 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 HSP90AB3PQ58FF7 597 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 SPECC1Q5M775 1068 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 TRIM22Q8IYM9 498 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 GRAMD1CQ8IYS0 662 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 NKX2-3Q8TAU0 364 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 GSDMAQ96QA5 445 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 MTA3Q9BTC8 594 aa8.27□□□□□ -1.09
USP48-206ENST00000464577 ISCA1Q9BUE6 129 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms