RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 LSG1Q9H089 658 aaKnown RBP20.51■□□□□ 0.87
LIME1-202ENST00000444951 DDTLA6NHG4 134 aaPredicted RBP20.5■□□□□ 0.87
LIME1-202ENST00000444951 USP17L12C9JPN9 530 aa20.5■□□□□ 0.87
LIME1-202ENST00000444951 USP17L21D6R901 530 aa20.5■□□□□ 0.87
LIME1-202ENST00000444951 FGAP02671 866 aa20.5■□□□□ 0.87
LIME1-202ENST00000444951 FAM83AQ86UY5 434 aa20.5■□□□□ 0.87
LIME1-202ENST00000444951 AMOTL1Q8IY63 956 aa20.5■□□□□ 0.87
LIME1-202ENST00000444951 FAM43AQ8N2R8 423 aa20.5■□□□□ 0.87
LIME1-202ENST00000444951 ZKSCAN4Q969J2 545 aaPredicted RBP20.5■□□□□ 0.87
LIME1-202ENST00000444951 DSCC1Q9BVC3 393 aa20.5■□□□□ 0.87
LIME1-202ENST00000444951 BAZ2AQ9UIF9 1905 aaKnown RBP20.5■□□□□ 0.87
LIME1-202ENST00000444951 RPAP1Q9BWH6 1393 aaPredicted RBP20.49■□□□□ 0.87
LIME1-202ENST00000444951 ZSWIM8A7E2V4 1837 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 CCL15-CCL14A0A0B4J2E2 113 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 EVX2Q03828 476 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 CCL15Q16663 113 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 CTR9Q6PD62 1173 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 SH3BP5LQ7L8J4 393 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 WRNIP1Q96S55 665 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 RBM8AQ9Y5S9 174 aaKnown RBP20.49■□□□□ 0.87
LIME1-202ENST00000444951 CSADQ9Y600 493 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 MYH1P12882 1939 aa20.49■□□□□ 0.87
LIME1-202ENST00000444951 SPDYE5A6NIY4 337 aa20.48■□□□□ 0.87
LIME1-202ENST00000444951 SMIM22K7EJ46 135 aa20.48■□□□□ 0.87
LIME1-202ENST00000444951 NPM3O75607 178 aaKnown RBP20.48■□□□□ 0.87
LIME1-202ENST00000444951 SLC34A2O95436 690 aa20.48■□□□□ 0.87
LIME1-202ENST00000444951 HAND2P61296 217 aa20.48■□□□□ 0.87
LIME1-202ENST00000444951 OTUD7BQ6GQQ9 843 aa20.48■□□□□ 0.87
LIME1-202ENST00000444951 GIMAP6Q6P9H5 292 aa20.48■□□□□ 0.87
LIME1-202ENST00000444951 U3KPZ7 1027 aaPredicted RBP20.48■□□□□ 0.87
LIME1-202ENST00000444951 HLA-DOAP06340 250 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 PLCD1P51178 756 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 SP3Q02447 781 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 ALX1Q15699 326 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 MIGA2Q7L4E1 593 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 MAP4K1Q92918 833 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 ERO1AQ96HE7 468 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 ARPP21Q9UBL0 812 aaPredicted RBP20.47■□□□□ 0.87
LIME1-202ENST00000444951 CTNNA3Q9UI47 895 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 PTPN22Q9Y2R2 807 aa20.47■□□□□ 0.87
LIME1-202ENST00000444951 SLURP2P0DP57 97 aa20.46■□□□□ 0.87
LIME1-202ENST00000444951 GTF2A2P52657 109 aa20.46■□□□□ 0.87
LIME1-202ENST00000444951 CTDSPL2Q05D32 466 aa20.46■□□□□ 0.87
LIME1-202ENST00000444951 TAF1CQ15572 869 aaPredicted RBP20.46■□□□□ 0.87
LIME1-202ENST00000444951 TTC6Q86TZ1 520 aa20.46■□□□□ 0.87
LIME1-202ENST00000444951 CRACR2BQ8N4Y2 399 aaPredicted RBP20.46■□□□□ 0.87
LIME1-202ENST00000444951 TRIM34Q9BYJ4 488 aa20.46■□□□□ 0.87
LIME1-202ENST00000444951 DHX36Q9H2U1 1008 aaKnown RBP20.46■□□□□ 0.87
LIME1-202ENST00000444951 DDX60LQ5H9U9 1706 aaKnown RBP20.46■□□□□ 0.87
LIME1-202ENST00000444951 KIAA0100Q14667 2235 aaKnown RBP20.45■□□□□ 0.86
LIME1-202ENST00000444951 POTEFA5A3E0 1075 aa20.45■□□□□ 0.86
LIME1-202ENST00000444951 FAM196BA6NMK8 535 aa20.45■□□□□ 0.86
LIME1-202ENST00000444951 IRF6O14896 467 aa20.45■□□□□ 0.86
LIME1-202ENST00000444951 INPP5BP32019 993 aa20.45■□□□□ 0.86
LIME1-202ENST00000444951 PPARAQ07869 468 aa20.45■□□□□ 0.86
LIME1-202ENST00000444951 C12orf60Q5U649 245 aa20.45■□□□□ 0.86
LIME1-202ENST00000444951 DYNLL2Q96FJ2 89 aa20.45■□□□□ 0.86
LIME1-202ENST00000444951 ZNF213O14771 459 aa20.44■□□□□ 0.86
LIME1-202ENST00000444951 IMMTQ16891 758 aaKnown RBP20.44■□□□□ 0.86
LIME1-202ENST00000444951 SBK1Q52WX2 424 aa20.44■□□□□ 0.86
LIME1-202ENST00000444951 ERO1BQ86YB8 467 aa20.44■□□□□ 0.86
LIME1-202ENST00000444951 USP26Q9BXU7 913 aa20.44■□□□□ 0.86
LIME1-202ENST00000444951 BACH2Q9BYV9 841 aa20.44■□□□□ 0.86
LIME1-202ENST00000444951 EFCC1Q9HA90 598 aa20.44■□□□□ 0.86
LIME1-202ENST00000444951 ATRNL1Q5VV63 1379 aa20.44■□□□□ 0.86
LIME1-202ENST00000444951 BTBD19C9JJ37 291 aa20.43■□□□□ 0.86
LIME1-202ENST00000444951 EIF5BO60841 1220 aaKnown RBP20.43■□□□□ 0.86
LIME1-202ENST00000444951 ZNF341Q9BYN7 854 aa20.43■□□□□ 0.86
LIME1-202ENST00000444951 PI4KBQ9UBF8 816 aa20.43■□□□□ 0.86
LIME1-202ENST00000444951 ZMYM6O95789 1325 aa20.43■□□□□ 0.86
LIME1-202ENST00000444951 COL2A1P02458 1487 aaPredicted RBP20.43■□□□□ 0.86
LIME1-202ENST00000444951 PPIL2Q13356 520 aa20.42■□□□□ 0.86
LIME1-202ENST00000444951 DCAF15Q66K64 600 aa20.42■□□□□ 0.86
LIME1-202ENST00000444951 CREB3L3Q68CJ9 461 aa20.42■□□□□ 0.86
LIME1-202ENST00000444951 SLC44A5Q8NCS7 719 aa20.42■□□□□ 0.86
LIME1-202ENST00000444951 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.42■□□□□ 0.862e-6■■■■■ 27.8
LIME1-202ENST00000444951 ZFYVE28Q9HCC9 887 aa20.42■□□□□ 0.86
LIME1-202ENST00000444951 INCENPQ9NQS7 918 aa20.42■□□□□ 0.86
LIME1-202ENST00000444951 TOMM22Q9NS69 142 aa20.42■□□□□ 0.86
LIME1-202ENST00000444951 RBBP6Q7Z6E9 1792 aaKnown RBP20.41■□□□□ 0.86
LIME1-202ENST00000444951 SLC27A2O14975 620 aa20.41■□□□□ 0.86
LIME1-202ENST00000444951 SLC3A2P08195 630 aaKnown RBP20.41■□□□□ 0.86
LIME1-202ENST00000444951 ARHGAP39Q9C0H5 1083 aa20.41■□□□□ 0.86
LIME1-202ENST00000444951 SERPINB13Q9UIV8 391 aa20.41■□□□□ 0.86
LIME1-202ENST00000444951 ZNF112Q9UJU3 913 aa20.41■□□□□ 0.86
LIME1-202ENST00000444951 TAF6LQ9Y6J9 622 aa20.41■□□□□ 0.86
LIME1-202ENST00000444951 SIPA1L1O43166 1804 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 PRDM1O75626 825 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 CYP21A2P08686 494 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 CETPP11597 493 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 MCCP23508 829 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 SNAPC2Q13487 334 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 NECTIN1Q15223 517 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 RRP12Q5JTH9 1297 aaKnown RBP20.4■□□□□ 0.86
LIME1-202ENST00000444951 TBC1D10CQ8IV04 446 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 FOXP4Q8IVH2 680 aaPredicted RBP20.4■□□□□ 0.86
LIME1-202ENST00000444951 ARMC5Q96C12 935 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 HOOK2Q96ED9 719 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 NBPF3Q9H094 633 aa20.4■□□□□ 0.86
LIME1-202ENST00000444951 UPF2Q9HAU5 1272 aaKnown RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms