RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 ZSWIM5Q9P217 1185 aa14.96□□□□□ -0.01
SCLT1-202ENST00000439369 ZNF112Q9UJU3 913 aa14.96□□□□□ -0.01
SCLT1-202ENST00000439369 TSPY2A6NKD2 308 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 KIF3CO14782 793 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 PPP1R12BO60237 982 aaPredicted RBP14.95□□□□□ -0.02
SCLT1-202ENST00000439369 RANBP6O60518 1105 aaKnown RBP14.95□□□□□ -0.02
SCLT1-202ENST00000439369 CTNND1O60716 968 aaKnown RBP14.95□□□□□ -0.02
SCLT1-202ENST00000439369 PRDM1O75626 825 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 TSPY3P0CV98 308 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 TSPY8P0CW00 308 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 YY1P25490 414 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 FKBP1BP68106 108 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 EXOSC10Q01780 885 aaKnown RBP14.95□□□□□ -0.02
SCLT1-202ENST00000439369 ANKRD1Q15327 319 aa14.95□□□□□ -0.02
SCLT1-202ENST00000439369 RRP12Q5JTH9 1297 aaKnown RBP14.95□□□□□ -0.02
SCLT1-202ENST00000439369 MAP1SQ66K74 1059 aaPredicted RBP14.95□□□□□ -0.02
SCLT1-202ENST00000439369 PHF20L1A8MW92 1017 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 PRC1O43663 620 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 ST18O60284 1047 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 CAP2P40123 477 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 TFAP4Q01664 338 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 MAP3K11Q16584 847 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 TMEM179Q6ZVK1 233 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 TMTC2Q8N394 836 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 RBM46Q8TBY0 533 aaKnown RBP14.94□□□□□ -0.02
SCLT1-202ENST00000439369 TTC14Q96N46 770 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 UBAC1Q9BSL1 405 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 AGXT2Q9BYV1 514 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 CABP5Q9NP86 173 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 INCENPQ9NQS7 918 aa14.94□□□□□ -0.02
SCLT1-202ENST00000439369 SCAF8Q9UPN6 1271 aaKnown RBP14.94□□□□□ -0.02
SCLT1-202ENST00000439369 POLR2AP24928 1970 aaKnown RBP14.94□□□□□ -0.02
SCLT1-202ENST00000439369 IGKV6D-41A0A0C4DH26 115 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 ERICH2A1L162 156 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 FAM196BA6NMK8 535 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 ITGBL1O95965 494 aaPredicted RBP14.93□□□□□ -0.02
SCLT1-202ENST00000439369 ASNSP08243 561 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 IREB2P48200 963 aaKnown RBP14.93□□□□□ -0.02
SCLT1-202ENST00000439369 NOVP48745 357 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 MCM2P49736 904 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 NEK4P51957 841 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 ANTXR2P58335 489 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 ABCB5Q2M3G0 1257 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 NOL9Q5SY16 702 aaKnown RBP14.93□□□□□ -0.02
SCLT1-202ENST00000439369 CYB5R4Q7L1T6 521 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 MIGA2Q7L4E1 593 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 DGKHQ86XP1 1220 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 STK11IPQ8N1F8 1099 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 SMC1BQ8NDV3 1235 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 ANKS1AQ92625 1134 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 KLRG1Q96E93 195 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 ZSCAN10Q96SZ4 725 aaPredicted RBP14.93□□□□□ -0.02
SCLT1-202ENST00000439369 UPF3BQ9BZI7 483 aaKnown RBP14.93□□□□□ -0.02
SCLT1-202ENST00000439369 PDRG1Q9NUG6 133 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 SYNPO2Q9UMS6 1093 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 MYH8P13535 1937 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 GREB1LQ9C091 1923 aaPredicted RBP14.93□□□□□ -0.02
SCLT1-202ENST00000439369 UTRNP46939 3433 aa14.93□□□□□ -0.02
SCLT1-202ENST00000439369 TOMM70O94826 608 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 AKR1B1P15121 316 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 LIFRP42702 1097 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 PRAMEF18Q5VWM3 479 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 ARMC9Q7Z3E5 817 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.92□□□□□ -0.02
SCLT1-202ENST00000439369 IGDCC4Q8TDY8 1250 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 TBC1D2Q9BYX2 928 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 KANSL2Q9H9L4 492 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 ZBTB21Q9ULJ3 1066 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 ANGEL1Q9UNK9 670 aaKnown RBP14.92□□□□□ -0.02
SCLT1-202ENST00000439369 PAPPA2Q9BXP8 1791 aa14.92□□□□□ -0.02
SCLT1-202ENST00000439369 SH2B2O14492 632 aaPredicted RBP14.91□□□□□ -0.02
SCLT1-202ENST00000439369 IFIT3O14879 490 aaKnown RBP14.91□□□□□ -0.02
SCLT1-202ENST00000439369 USP2O75604 605 aaPredicted RBP14.91□□□□□ -0.02
SCLT1-202ENST00000439369 FSTL1Q12841 308 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 SEC23AQ15436 765 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 TMEM67Q5HYA8 995 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 FAM47AQ5JRC9 791 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 SGMS1Q86VZ5 419 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 ZNF784Q8NCA9 323 aaPredicted RBP14.91□□□□□ -0.02
SCLT1-202ENST00000439369 WRNIP1Q96S55 665 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.91□□□□□ -0.02
SCLT1-202ENST00000439369 MTMR4Q9NYA4 1195 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 TNKSO95271 1327 aa14.91□□□□□ -0.02
SCLT1-202ENST00000439369 TRAF5O00463 557 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 MPHOSPH10O00566 681 aaKnown RBP14.9□□□□□ -0.02
SCLT1-202ENST00000439369 GH2P01242 217 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 RCAN1P53805 252 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 EVCP57679 992 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 MAP3K9P80192 1104 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 FGD1P98174 961 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 SCYL3Q8IZE3 742 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 ENAHQ8N8S7 591 aaPredicted RBP14.9□□□□□ -0.02
SCLT1-202ENST00000439369 SNX21Q969T3 373 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 TSHZ2Q9NRE2 1034 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 IL17RBQ9NRM6 502 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 NYAP2Q9P242 653 aa14.9□□□□□ -0.02
SCLT1-202ENST00000439369 DOCK1Q14185 1865 aa14.89□□□□□ -0.03
SCLT1-202ENST00000439369 TTLL1O95922 423 aa14.89□□□□□ -0.03
SCLT1-202ENST00000439369 SLURP2P0DP57 97 aa14.89□□□□□ -0.03
SCLT1-202ENST00000439369 CPA1P15085 419 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms