RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 GREB1LQ9C091 1923 aaPredicted RBP27.07■■□□□ 1.92
CPSF4-204ENST00000436336 ERICH2A1L162 156 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 SHMT1P34896 483 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 EPHX2P34913 555 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 TFAP4Q01664 338 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 FAM47AQ5JRC9 791 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 LARP6Q9BRS8 491 aaKnown RBP27.07■■□□□ 1.92
CPSF4-204ENST00000436336 GGA3Q9NZ52 723 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 TSPY3P0CV98 308 aa27.06■■□□□ 1.92
CPSF4-204ENST00000436336 TSPY8P0CW00 308 aa27.06■■□□□ 1.92
CPSF4-204ENST00000436336 LIFRP42702 1097 aa27.06■■□□□ 1.92
CPSF4-204ENST00000436336 TMEM67Q5HYA8 995 aa27.06■■□□□ 1.92
CPSF4-204ENST00000436336 ZSCAN10Q96SZ4 725 aaPredicted RBP27.06■■□□□ 1.92
CPSF4-204ENST00000436336 ZKSCAN3Q9BRR0 538 aa27.06■■□□□ 1.92
CPSF4-204ENST00000436336 DNAJC18Q9H819 358 aa27.06■■□□□ 1.92
CPSF4-204ENST00000436336 TPCN1Q9ULQ1 816 aa27.06■■□□□ 1.92
CPSF4-204ENST00000436336 SLC4A3P48751 1232 aa27.05■■□□□ 1.92
CPSF4-204ENST00000436336 EVCP57679 992 aa27.05■■□□□ 1.92
CPSF4-204ENST00000436336 DEFB129Q9H1M3 183 aa27.05■■□□□ 1.92
CPSF4-204ENST00000436336 GPHNQ9NQX3 736 aaPredicted RBP27.05■■□□□ 1.92
CPSF4-204ENST00000436336 SH2B1Q9NRF2 756 aaPredicted RBP27.05■■□□□ 1.92
CPSF4-204ENST00000436336 TNKSO95271 1327 aa27.05■■□□□ 1.92
CPSF4-204ENST00000436336 TEPSINQ96N21 525 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 LY9Q9HBG7 655 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 TCP11L1Q9NUJ3 509 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 PLIN4Q96Q06 1357 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 TBC1D12O60347 775 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 APOBRQ0VD83 1088 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 WTAPQ15007 396 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 CCDC178Q5BJE1 867 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 TATDN1Q6P1N9 297 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 TMTC2Q8N394 836 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 NEDD1Q8NHV4 660 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 SCAF8Q9UPN6 1271 aaKnown RBP27.04■■□□□ 1.92
CPSF4-204ENST00000436336 PPP2R3BQ9Y5P8 575 aa27.04■■□□□ 1.92
CPSF4-204ENST00000436336 SEC23AQ15436 765 aa27.03■■□□□ 1.92
CPSF4-204ENST00000436336 ME3Q16798 604 aa27.03■■□□□ 1.92
CPSF4-204ENST00000436336 SGMS1Q86VZ5 419 aa27.03■■□□□ 1.92
CPSF4-204ENST00000436336 CCDC17Q96LX7 622 aa27.03■■□□□ 1.92
CPSF4-204ENST00000436336 POTECB2RU33 542 aa27.02■■□□□ 1.92
CPSF4-204ENST00000436336 CDAN1Q8IWY9 1227 aa27.02■■□□□ 1.92
CPSF4-204ENST00000436336 ZNF274Q96GC6 653 aaPredicted RBP27.02■■□□□ 1.92
CPSF4-204ENST00000436336 TAF1DQ9H5J8 278 aaPredicted RBP27.02■■□□□ 1.92
CPSF4-204ENST00000436336 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.02■■□□□ 1.926e-7■■□□□ 14.2
CPSF4-204ENST00000436336 FAM196BA6NMK8 535 aa27.02■■□□□ 1.92
CPSF4-204ENST00000436336 LARGE1O95461 756 aa27.02■■□□□ 1.92
CPSF4-204ENST00000436336 SLURP2P0DP57 97 aa27.02■■□□□ 1.92
CPSF4-204ENST00000436336 ENAHQ8N8S7 591 aaPredicted RBP27.02■■□□□ 1.92
CPSF4-204ENST00000436336 ZC3H15Q8WU90 426 aaKnown RBP27.02■■□□□ 1.92
CPSF4-204ENST00000436336 MAP3K10Q02779 954 aa27.01■■□□□ 1.91
CPSF4-204ENST00000436336 CUL4AQ13619 759 aa27.01■■□□□ 1.91
CPSF4-204ENST00000436336 DCPSQ96C86 337 aaKnown RBP27.01■■□□□ 1.91
CPSF4-204ENST00000436336 IL17RBQ9NRM6 502 aa27.01■■□□□ 1.91
CPSF4-204ENST00000436336 ATAD5Q96QE3 1844 aa27■■□□□ 1.91
CPSF4-204ENST00000436336 AKR1B1P15121 316 aa27■■□□□ 1.91
CPSF4-204ENST00000436336 CERKLQ49MI3 558 aaPredicted RBP27■■□□□ 1.91
CPSF4-204ENST00000436336 PNMA8AQ86V59 439 aaPredicted RBP27■■□□□ 1.91
CPSF4-204ENST00000436336 MYH4Q9Y623 1939 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 KLF18A0A0U1RQI7 1052 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 CCDC69A6NI79 296 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 NMT2O60551 498 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 IFIT1BQ5T764 474 aaKnown RBP26.99■■□□□ 1.91
CPSF4-204ENST00000436336 NFXL1Q6ZNB6 911 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 DGKHQ86XP1 1220 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 SENP2Q9HC62 589 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 BRPF3Q9ULD4 1205 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 HSP90AA1P07900 732 aaKnown RBP26.99■■□□□ 1.91
CPSF4-204ENST00000436336 HOOK2Q96ED9 719 aa26.99■■□□□ 1.91
CPSF4-204ENST00000436336 PDIA3P30101 505 aaKnown RBP26.98■■□□□ 1.91
CPSF4-204ENST00000436336 ANKS1AQ92625 1134 aa26.98■■□□□ 1.91
CPSF4-204ENST00000436336 SLKQ9H2G2 1235 aaPredicted RBP26.98■■□□□ 1.91
CPSF4-204ENST00000436336 PFKFB2O60825 505 aa26.97■■□□□ 1.91
CPSF4-204ENST00000436336 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.97■■□□□ 1.91
CPSF4-204ENST00000436336 NAP1L2Q9ULW6 460 aaPredicted RBP26.97■■□□□ 1.91
CPSF4-204ENST00000436336 SLC12A7Q9Y666 1083 aa26.97■■□□□ 1.91
CPSF4-204ENST00000436336 STK3Q13188 491 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 NBPF12Q5TAG4 269 aaPredicted RBP26.96■■□□□ 1.91
CPSF4-204ENST00000436336 RCSD1Q6JBY9 416 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 APOA5Q6Q788 366 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 MIGA2Q7L4E1 593 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 SULF1Q8IWU6 871 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 INTS4Q96HW7 963 aaKnown RBP26.96■■□□□ 1.91
CPSF4-204ENST00000436336 IGKV6D-41A0A0C4DH26 115 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 MPHOSPH10O00566 681 aaKnown RBP26.96■■□□□ 1.91
CPSF4-204ENST00000436336 SYNE3Q6ZMZ3 975 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 GTF3C6Q969F1 213 aa26.96■■□□□ 1.91
CPSF4-204ENST00000436336 GOLGA8BA8MQT2 603 aa26.95■■□□□ 1.9
CPSF4-204ENST00000436336 NOVP48745 357 aa26.95■■□□□ 1.9
CPSF4-204ENST00000436336 ABCB5Q2M3G0 1257 aa26.95■■□□□ 1.9
CPSF4-204ENST00000436336 EAPPQ56P03 285 aaPredicted RBP26.95■■□□□ 1.9
CPSF4-204ENST00000436336 CCDC83Q8IWF9 413 aa26.95■■□□□ 1.9
CPSF4-204ENST00000436336 NECAB1Q8N987 351 aa26.95■■□□□ 1.9
CPSF4-204ENST00000436336 CEP95Q96GE4 821 aa26.95■■□□□ 1.9
CPSF4-204ENST00000436336 ZBTB43O43298 467 aa26.94■■□□□ 1.9
CPSF4-204ENST00000436336 RCAN1P53805 252 aa26.94■■□□□ 1.9
CPSF4-204ENST00000436336 PPP4R3BQ5MIZ7 849 aa26.94■■□□□ 1.9
CPSF4-204ENST00000436336 DCAF15Q66K64 600 aa26.94■■□□□ 1.9
CPSF4-204ENST00000436336 TMEM179Q6ZVK1 233 aa26.94■■□□□ 1.9
CPSF4-204ENST00000436336 SPRYD3Q8NCJ5 442 aa26.94■■□□□ 1.9
CPSF4-204ENST00000436336 CHMP4CQ96CF2 233 aa26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms