RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 TCP10Q12799 353 aa27.12■■□□□ 1.93
SDF4-202ENST00000360001 LARP1BQ659C4 914 aaKnown RBP27.12■■□□□ 1.93
SDF4-202ENST00000360001 ARHGAP27Q6ZUM4 889 aa27.12■■□□□ 1.93
SDF4-202ENST00000360001 ZNF654Q8IZM8 581 aa27.12■■□□□ 1.93
SDF4-202ENST00000360001 IL17RBQ9NRM6 502 aa27.12■■□□□ 1.93
SDF4-202ENST00000360001 SIPA1L1O43166 1804 aa27.12■■□□□ 1.93
SDF4-202ENST00000360001 GOLGA8AA7E2F4 631 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 PDCP20941 246 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 ADD1P35611 737 aaKnown RBP27.11■■□□□ 1.93
SDF4-202ENST00000360001 RCAN1P53805 252 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 CCDC144CPQ8IYA2 1237 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 MTMR6Q9Y217 621 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 TSPY3P0CV98 308 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 TSPY8P0CW00 308 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 RCSD1Q6JBY9 416 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 SH3BP5LQ7L8J4 393 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 DHX36Q9H2U1 1008 aaKnown RBP27.11■■□□□ 1.93
SDF4-202ENST00000360001 TCP11L1Q9NUJ3 509 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 SERPINB13Q9UIV8 391 aa27.11■■□□□ 1.93
SDF4-202ENST00000360001 UTRNP46939 3433 aa27.1■■□□□ 1.93
SDF4-202ENST00000360001 CPLX1O14810 134 aa27.1■■□□□ 1.93
SDF4-202ENST00000360001 HLA-DOAP06340 250 aa27.1■■□□□ 1.93
SDF4-202ENST00000360001 ZSCAN22P10073 491 aaPredicted RBP27.1■■□□□ 1.93
SDF4-202ENST00000360001 RPS12P25398 132 aaKnown RBP27.1■■□□□ 1.93
SDF4-202ENST00000360001 EIF6P56537 245 aaKnown RBP27.1■■□□□ 1.93
SDF4-202ENST00000360001 EHD4Q9H223 541 aa27.1■■□□□ 1.93
SDF4-202ENST00000360001 SRCAPQ6ZRS2 3230 aa27.1■■□□□ 1.93
SDF4-202ENST00000360001 DICER1Q9UPY3 1922 aaKnown RBP27.1■■□□□ 1.93
SDF4-202ENST00000360001 DDTLA6NHG4 134 aaPredicted RBP27.09■■□□□ 1.93
SDF4-202ENST00000360001 PPFIA3O75145 1194 aa27.09■■□□□ 1.93
SDF4-202ENST00000360001 ENTPD3O75355 529 aa27.09■■□□□ 1.93
SDF4-202ENST00000360001 MCM4P33991 863 aa27.09■■□□□ 1.93
SDF4-202ENST00000360001 ZBED3Q96IU2 234 aaPredicted RBP27.09■■□□□ 1.93
SDF4-202ENST00000360001 GBP4Q96PP9 640 aa27.09■■□□□ 1.93
SDF4-202ENST00000360001 SHTN1A0MZ66 631 aa27.09■■□□□ 1.93
SDF4-202ENST00000360001 PDIA4P13667 645 aaKnown RBP27.09■■□□□ 1.93
SDF4-202ENST00000360001 FDPSP14324 419 aaKnown RBP27.09■■□□□ 1.93
SDF4-202ENST00000360001 ZNF70Q9UC06 446 aaPredicted RBP27.09■■□□□ 1.93
SDF4-202ENST00000360001 SWAP70Q9UH65 585 aa27.09■■□□□ 1.93
SDF4-202ENST00000360001 MYH8P13535 1937 aa27.08■■□□□ 1.93
SDF4-202ENST00000360001 ZNF280AP59817 542 aaPredicted RBP27.08■■□□□ 1.93
SDF4-202ENST00000360001 FAM184AQ8NB25 1140 aa27.08■■□□□ 1.93
SDF4-202ENST00000360001 NEDD1Q8NHV4 660 aa27.08■■□□□ 1.93
SDF4-202ENST00000360001 SBF1O95248 1867 aa27.08■■□□□ 1.93
SDF4-202ENST00000360001 COL2A1P02458 1487 aaPredicted RBP27.08■■□□□ 1.92
SDF4-202ENST00000360001 ATRNL1Q5VV63 1379 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 BAG4O95429 457 aaKnown RBP27.08■■□□□ 1.92
SDF4-202ENST00000360001 LMNB1P20700 586 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 MMP14P50281 582 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 NTRK3Q16288 839 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 SPDYE2Q495Y8 402 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 CATIPQ7Z7H3 387 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 DGKHQ86XP1 1220 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 ANKS1AQ92625 1134 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 TMOD2Q9NZR1 351 aa27.08■■□□□ 1.92
SDF4-202ENST00000360001 ZNF541Q9H0D2 1346 aa27.07■■□□□ 1.92
SDF4-202ENST00000360001 CLRN2A0PK11 232 aa27.07■■□□□ 1.92
SDF4-202ENST00000360001 RTN1Q16799 776 aa27.07■■□□□ 1.92
SDF4-202ENST00000360001 CCDC178Q5BJE1 867 aa27.07■■□□□ 1.92
SDF4-202ENST00000360001 FANCBQ8NB91 859 aa27.07■■□□□ 1.92
SDF4-202ENST00000360001 MYOZ2Q9NPC6 264 aa27.07■■□□□ 1.92
SDF4-202ENST00000360001 VPS37CA5D8V6 355 aaPredicted RBP27.06■■□□□ 1.92
SDF4-202ENST00000360001 SHMT1P34896 483 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 GMPSP49915 693 aaPredicted RBP27.06■■□□□ 1.92
SDF4-202ENST00000360001 TROAPQ12815 778 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 NUP133Q8WUM0 1156 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 PI4KBQ9UBF8 816 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 ZSCAN29Q8IWY8 852 aaPredicted RBP27.06■■□□□ 1.92
SDF4-202ENST00000360001 DPF2Q92785 391 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 DNAJC18Q9H819 358 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 KIF3AQ9Y496 699 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 GJA3Q9Y6H8 435 aa27.06■■□□□ 1.92
SDF4-202ENST00000360001 PLIN4Q96Q06 1357 aa27.05■■□□□ 1.92
SDF4-202ENST00000360001 CDKL5O76039 1030 aa27.05■■□□□ 1.92
SDF4-202ENST00000360001 CPLX2Q6PUV4 134 aaKnown RBP27.05■■□□□ 1.92
SDF4-202ENST00000360001 TCP10L2B9ZVM9 353 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 WNT10BO00744 389 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 DDAH1O94760 285 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 F13A1P00488 732 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 SLURP2P0DP57 97 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 YBX3P16989 372 aaKnown RBP eCLIP27.04■■□□□ 1.92
SDF4-202ENST00000360001 CDC37L1Q7L3B6 337 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.04■■□□□ 1.92
SDF4-202ENST00000360001 ORC3Q9UBD5 711 aaPredicted RBP27.04■■□□□ 1.92
SDF4-202ENST00000360001 CALM1P0DP23 149 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 CALM2P0DP24 149 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 CALM3P0DP25 149 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 PPP2R5BQ15173 497 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 FKBP1CQ5VVH2 108 aa27.04■■□□□ 1.92
SDF4-202ENST00000360001 CCDC196A0A1B0GTZ2 297 aa27.03■■□□□ 1.92
SDF4-202ENST00000360001 NBPF9Q3BBW0 867 aa27.03■■□□□ 1.92
SDF4-202ENST00000360001 TAOK2Q9UL54 1235 aa27.03■■□□□ 1.92
SDF4-202ENST00000360001 CNTNAP1P78357 1384 aa27.03■■□□□ 1.92
SDF4-202ENST00000360001 AKR1B1P15121 316 aa27.02■■□□□ 1.92
SDF4-202ENST00000360001 IFNAR1P17181 557 aa27.02■■□□□ 1.92
SDF4-202ENST00000360001 METTL16Q86W50 562 aaKnown RBP27.02■■□□□ 1.92
SDF4-202ENST00000360001 MICALL2Q8IY33 904 aa27.02■■□□□ 1.92
SDF4-202ENST00000360001 PHKBQ93100 1093 aa27.02■■□□□ 1.92
SDF4-202ENST00000360001 CHAMP1Q96JM3 812 aa27.02■■□□□ 1.92
SDF4-202ENST00000360001 EGFRP00533 1210 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms