RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ENGASEQ8NFI3 743 aa24.7■■□□□ 1.54
LIME1-210ENST00000621325 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.7■■□□□ 1.54
LIME1-210ENST00000621325 TPM2P07951 284 aa24.7■■□□□ 1.54
LIME1-210ENST00000621325 ZSCAN30Q86W11 494 aa24.7■■□□□ 1.54
LIME1-210ENST00000621325 FANCBQ8NB91 859 aa24.7■■□□□ 1.54
LIME1-210ENST00000621325 ZSCAN10Q96SZ4 725 aaPredicted RBP24.7■■□□□ 1.54
LIME1-210ENST00000621325 STK36Q9NRP7 1315 aa24.69■■□□□ 1.54
LIME1-210ENST00000621325 AP5Z1O43299 807 aa24.69■■□□□ 1.54
LIME1-210ENST00000621325 FGRP09769 529 aa24.69■■□□□ 1.54
LIME1-210ENST00000621325 CCDC73Q6ZRK6 1079 aa24.69■■□□□ 1.54
LIME1-210ENST00000621325 NBPF11Q86T75 865 aa24.69■■□□□ 1.54
LIME1-210ENST00000621325 POLRMTO00411 1230 aaKnown RBP24.69■■□□□ 1.54
LIME1-210ENST00000621325 SF3A1Q15459 793 aaKnown RBP24.69■■□□□ 1.54
LIME1-210ENST00000621325 DIXDC1Q155Q3 683 aa24.69■■□□□ 1.54
LIME1-210ENST00000621325 ANO1Q5XXA6 986 aa24.69■■□□□ 1.54
LIME1-210ENST00000621325 SPTLC2O15270 562 aa24.68■■□□□ 1.54
LIME1-210ENST00000621325 UFL1O94874 794 aa24.68■■□□□ 1.54
LIME1-210ENST00000621325 YEATS4O95619 227 aa24.68■■□□□ 1.54
LIME1-210ENST00000621325 ADCY5O95622 1261 aa24.68■■□□□ 1.54
LIME1-210ENST00000621325 LDHBP07195 334 aaKnown RBP24.68■■□□□ 1.54
LIME1-210ENST00000621325 ANO6Q4KMQ2 910 aa24.68■■□□□ 1.54
LIME1-210ENST00000621325 ADALQ6DHV7 355 aa24.68■■□□□ 1.54
LIME1-210ENST00000621325 A0A1B0GVL5 298 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 FAM160A1Q05DH4 1040 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 HS1BP3Q53T59 392 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 SPTY2D1Q68D10 685 aaPredicted RBP24.67■■□□□ 1.54
LIME1-210ENST00000621325 AEBP2Q6ZN18 517 aaPredicted RBP24.67■■□□□ 1.54
LIME1-210ENST00000621325 CRACR2BQ8N4Y2 399 aaPredicted RBP24.67■■□□□ 1.54
LIME1-210ENST00000621325 RGS22Q8NE09 1264 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 WDR66Q8TBY9 1149 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.67■■□□□ 1.54
LIME1-210ENST00000621325 TRIM29Q14134 588 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 ZNF804AQ7Z570 1209 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 FAM200AQ8TCP9 573 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 KCNG4Q8TDN1 519 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 RBM17Q96I25 401 aaKnown RBP24.67■■□□□ 1.54
LIME1-210ENST00000621325 ATP8A2Q9NTI2 1148 aa24.67■■□□□ 1.54
LIME1-210ENST00000621325 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.67■■□□□ 1.54
LIME1-210ENST00000621325 NMT2O60551 498 aa24.66■■□□□ 1.54
LIME1-210ENST00000621325 PLCB2Q00722 1185 aa24.66■■□□□ 1.54
LIME1-210ENST00000621325 GNL2Q13823 731 aaKnown RBP24.66■■□□□ 1.54
LIME1-210ENST00000621325 LUZP1Q86V48 1076 aa24.66■■□□□ 1.54
LIME1-210ENST00000621325 MPNDQ8N594 471 aa24.66■■□□□ 1.54
LIME1-210ENST00000621325 KCNJ14Q9UNX9 436 aa24.66■■□□□ 1.54
LIME1-210ENST00000621325 MRPS27Q92552 414 aaKnown RBP24.66■■□□□ 1.54
LIME1-210ENST00000621325 CCDC88AQ3V6T2 1871 aa24.66■■□□□ 1.54
LIME1-210ENST00000621325 MAST2Q6P0Q8 1798 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 ZBTB22O15209 634 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 USP17L8P0C7I0 530 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 U2AF2P26368 475 aaKnown RBP eCLIP24.65■■□□□ 1.541e-9■■■■□ 23
LIME1-210ENST00000621325 FAM47AQ5JRC9 791 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 SASS6Q6UVJ0 657 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.65■■□□□ 1.54
LIME1-210ENST00000621325 NDUFA8P51970 172 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 IFIT1BQ5T764 474 aaKnown RBP24.65■■□□□ 1.54
LIME1-210ENST00000621325 C15orf52Q6ZUT6 534 aaKnown RBP24.65■■□□□ 1.54
LIME1-210ENST00000621325 TRIM22Q8IYM9 498 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 FMR1NBQ8N0W7 255 aaPredicted RBP24.65■■□□□ 1.54
LIME1-210ENST00000621325 SH3RF3Q8TEJ3 882 aaPredicted RBP24.65■■□□□ 1.54
LIME1-210ENST00000621325 MCM9Q9NXL9 1143 aa24.65■■□□□ 1.54
LIME1-210ENST00000621325 KINO60870 393 aaKnown RBP24.64■■□□□ 1.54
LIME1-210ENST00000621325 MARCKSP29966 332 aaPredicted RBP24.64■■□□□ 1.54
LIME1-210ENST00000621325 ZNF827Q17R98 1081 aa24.64■■□□□ 1.54
LIME1-210ENST00000621325 ERCC4Q92889 916 aaPredicted RBP24.64■■□□□ 1.54
LIME1-210ENST00000621325 CBX8Q9HC52 389 aa24.64■■□□□ 1.54
LIME1-210ENST00000621325 CD209Q9NNX6 404 aa24.64■■□□□ 1.54
LIME1-210ENST00000621325 CCDC196A0A1B0GTZ2 297 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 A0A1W2PQ27 194 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 A0A1W2PQ64 194 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 A0A1W2PQD8 194 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 RCAN1P53805 252 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 IQCA1Q86XH1 822 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 DNAJC25Q9H1X3 360 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 POLLQ9UGP5 575 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 GGA1Q9UJY5 639 aa24.64■■□□□ 1.53
LIME1-210ENST00000621325 NOL7Q9UMY1 257 aaKnown RBP24.64■■□□□ 1.53
LIME1-210ENST00000621325 A0A087WWV3 80 aa24.63■■□□□ 1.53
LIME1-210ENST00000621325 BTBD18B2RXH4 712 aa24.63■■□□□ 1.53
LIME1-210ENST00000621325 WDHD1O75717 1129 aaPredicted RBP24.63■■□□□ 1.53
LIME1-210ENST00000621325 AXDND1Q5T1B0 1012 aaPredicted RBP24.63■■□□□ 1.53
LIME1-210ENST00000621325 BBXQ8WY36 941 aaPredicted RBP24.63■■□□□ 1.53
LIME1-210ENST00000621325 ARPP21Q9UBL0 812 aaPredicted RBP24.63■■□□□ 1.53
LIME1-210ENST00000621325 ORC4O43929 436 aa24.63■■□□□ 1.53
LIME1-210ENST00000621325 PCP11498 1178 aaKnown RBP24.63■■□□□ 1.53
LIME1-210ENST00000621325 HOXA10P31260 410 aaPredicted RBP24.63■■□□□ 1.53
LIME1-210ENST00000621325 SLC39A14Q15043 492 aa24.63■■□□□ 1.53
LIME1-210ENST00000621325 WASF1Q92558 559 aa24.63■■□□□ 1.53
LIME1-210ENST00000621325 CCDC39Q9UFE4 941 aa24.63■■□□□ 1.53
LIME1-210ENST00000621325 MMP1P03956 469 aa24.62■■□□□ 1.53
LIME1-210ENST00000621325 ATP2B4P23634 1241 aa24.62■■□□□ 1.53
LIME1-210ENST00000621325 SBK1Q52WX2 424 aa24.62■■□□□ 1.53
LIME1-210ENST00000621325 MKRN1Q9UHC7 482 aaKnown RBP24.62■■□□□ 1.53
LIME1-210ENST00000621325 BBOX1O75936 387 aa24.62■■□□□ 1.53
LIME1-210ENST00000621325 DEXIO95424 95 aa24.62■■□□□ 1.53
LIME1-210ENST00000621325 PTMAP06454 111 aaKnown RBP24.62■■□□□ 1.53
LIME1-210ENST00000621325 MAP3K14Q99558 947 aa24.62■■□□□ 1.53
LIME1-210ENST00000621325 hCG_1642624A0A1W2PR95 340 aa24.61■■□□□ 1.53
LIME1-210ENST00000621325 PLEKHA8P1O95397 391 aa24.61■■□□□ 1.53
LIME1-210ENST00000621325 TROAPQ12815 778 aa24.61■■□□□ 1.53
LIME1-210ENST00000621325 PTPAQ15257 358 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms