RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ABCF2Q9UG63 623 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 NR2E3Q9Y5X4 410 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 MGAMO43451 1857 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 PHF20L1A8MW92 1017 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 WDHD1O75717 1129 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-214ENST00000600840 FARP2O94887 1054 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-214ENST00000600840 GJB1P08034 283 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 ARID4AP29374 1257 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-214ENST00000600840 RHBDL3P58872 404 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 MECOMQ03112 1051 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 PPIL2Q13356 520 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 DCAF15Q66K64 600 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 DEFB123Q8N688 67 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 TRIM47Q96LD4 638 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 LNPKQ9C0E8 428 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 RNF208Q9H0X6 261 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-214ENST00000600840 CPA4Q9UI42 421 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 PHIPQ8WWQ0 1821 aa10.67□□□□□ -0.7
TRIM28-214ENST00000600840 COL6A3P12111 3177 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 A0A1W2PPC1 479 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 CETPP11597 493 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 ATP5JP18859 108 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 OSBPP22059 807 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 GRK4P32298 578 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 MCAMP43121 646 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 BTDP43251 543 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 PSMC4P43686 418 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 CCDC84Q86UT8 332 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-214ENST00000600840 SKAP1Q86WV1 359 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 NKX2-3Q8TAU0 364 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 PI4K2BQ8TCG2 481 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 U2AF1L4Q8WU68 220 aaKnown RBP10.66□□□□□ -0.7
TRIM28-214ENST00000600840 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.66□□□□□ -0.7
TRIM28-214ENST00000600840 FAM163AQ96GL9 167 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-214ENST00000600840 IDI2Q9BXS1 227 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 SRRDQ9UH36 339 aa10.66□□□□□ -0.7
TRIM28-214ENST00000600840 MROH7-TTC4A0A0A0MT08 1334 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 PDS5AQ29RF7 1337 aaKnown RBP10.65□□□□□ -0.7
TRIM28-214ENST00000600840 PTPRFP10586 1907 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 GPR75-ASB3A0A0A6YYF3 556 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 EVI5O60447 810 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 ENTPD3O75355 529 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 PDE1AP54750 535 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 MAP3K10Q02779 954 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 PPATQ06203 517 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 SNAPC2Q13487 334 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 PICALMQ13492 652 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 NOL9Q5SY16 702 aaKnown RBP10.65□□□□□ -0.7
TRIM28-214ENST00000600840 GPAT2Q6NUI2 795 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 ERICH6Q7L0X2 663 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 DZIP1Q86YF9 867 aaKnown RBP10.65□□□□□ -0.7
TRIM28-214ENST00000600840 SPATA5Q8NB90 893 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 RAET1EQ8TD07 263 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 NSUN4Q96CB9 384 aaKnown RBP10.65□□□□□ -0.7
TRIM28-214ENST00000600840 UNC93B1Q9H1C4 597 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 SNRKQ9NRH2 765 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 ECHDC1Q9NTX5 307 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 BIN2Q9UBW5 565 aaPredicted RBP10.65□□□□□ -0.7
TRIM28-214ENST00000600840 KCNH4Q9UQ05 1017 aa10.65□□□□□ -0.7
TRIM28-214ENST00000600840 MYPNQ86TC9 1320 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 ADGRA2Q96PE1 1338 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 CDK5RAP2Q96SN8 1893 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 SIPA1L1O43166 1804 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 FAM196BA6NMK8 535 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 GNRH1P01148 92 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 IFIT2P09913 472 aaKnown RBP10.64□□□□□ -0.71
TRIM28-214ENST00000600840 PRMT2P55345 433 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 RRP1BQ14684 758 aaKnown RBP10.64□□□□□ -0.71
TRIM28-214ENST00000600840 C17orf99Q6UX52 265 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 ZGPATQ8N5A5 531 aaKnown RBP10.64□□□□□ -0.71
TRIM28-214ENST00000600840 HOOK2Q96ED9 719 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 STXBP5LQ9Y2K9 1186 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 DOCK1Q14185 1865 aa10.64□□□□□ -0.71
TRIM28-214ENST00000600840 TTC41PQ6P2S7 1318 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 RANBP2P49792 3224 aaKnown RBP10.63□□□□□ -0.71
TRIM28-214ENST00000600840 PDHXO00330 501 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 FMNL1O95466 1100 aaPredicted RBP10.63□□□□□ -0.71
TRIM28-214ENST00000600840 UQCRFS1P1P0C7P4 283 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 PTPRAP18433 802 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 MX1P20591 662 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 PRKCZQ05513 592 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 GORABQ5T7V8 394 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 TSHZ3Q63HK5 1081 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 ADGRA1Q86SQ6 560 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 ZSCAN29Q8IWY8 852 aaPredicted RBP10.63□□□□□ -0.71
TRIM28-214ENST00000600840 MTMR10Q9NXD2 777 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 ZMYND8Q9ULU4 1186 aaPredicted RBP10.63□□□□□ -0.71
TRIM28-214ENST00000600840 GABRQQ9UN88 632 aa10.63□□□□□ -0.71
TRIM28-214ENST00000600840 SGPL1O95470 568 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 CYP2E1P05181 493 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-214ENST00000600840 CYP2C8P10632 490 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 ZAP70P43403 619 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 CCDC158Q5M9N0 1113 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 SPTY2D1Q68D10 685 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-214ENST00000600840 ANKRD23Q86SG2 305 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 SCYL3Q8IZE3 742 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 HAUS7Q99871 368 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 GDF15Q99988 308 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 ANTXR1Q9H6X2 564 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms