RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ORC4O43929 436 aa12.71□□□□□ -0.38
SS18-213ENST00000579640 PLCD1P51178 756 aa12.71□□□□□ -0.38
SS18-213ENST00000579640 HIRAP54198 1017 aaPredicted RBP12.71□□□□□ -0.38
SS18-213ENST00000579640 PNMA8AQ86V59 439 aaPredicted RBP12.71□□□□□ -0.38
SS18-213ENST00000579640 FOXP4Q8IVH2 680 aaPredicted RBP12.71□□□□□ -0.38
SS18-213ENST00000579640 ZSCAN29Q8IWY8 852 aaPredicted RBP12.71□□□□□ -0.38
SS18-213ENST00000579640 ZC3H15Q8WU90 426 aaKnown RBP12.71□□□□□ -0.38
SS18-213ENST00000579640 SWAP70Q9UH65 585 aa12.71□□□□□ -0.38
SS18-213ENST00000579640 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.71□□□□□ -0.38
SS18-213ENST00000579640 PPP2R3BQ9Y5P8 575 aa12.71□□□□□ -0.38
SS18-213ENST00000579640 ST18O60284 1047 aa12.7□□□□□ -0.38
SS18-213ENST00000579640 ANGEL2Q5VTE6 544 aaKnown RBP12.7□□□□□ -0.38
SS18-213ENST00000579640 C16orf86Q6ZW13 317 aa12.7□□□□□ -0.38
SS18-213ENST00000579640 RUFY3Q7L099 469 aa12.7□□□□□ -0.38
SS18-213ENST00000579640 DHX32Q7L7V1 743 aaKnown RBP12.7□□□□□ -0.38
SS18-213ENST00000579640 ZFPM1Q8IX07 1006 aa12.7□□□□□ -0.38
SS18-213ENST00000579640 TAF1DQ9H5J8 278 aaPredicted RBP12.7□□□□□ -0.38
SS18-213ENST00000579640 SERPINB13Q9UIV8 391 aa12.7□□□□□ -0.38
SS18-213ENST00000579640 WDR19Q8NEZ3 1342 aa12.7□□□□□ -0.38
SS18-213ENST00000579640 DDTLA6NHG4 134 aaPredicted RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 RPS6KB1P23443 525 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 MCM5P33992 734 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 ANP32AP39687 249 aaKnown RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 GABPAQ06546 454 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 RASA3Q14644 834 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 SH3BP5LQ7L8J4 393 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 METTL16Q86W50 562 aaKnown RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 MB21D2Q8IYB1 491 aaPredicted RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 ESR2Q92731 530 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 GGA3Q9NZ52 723 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 NEDD4P46934 1319 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 POTECB2RU33 542 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 NEK4P51957 841 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 SLC4A8Q2Y0W8 1093 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 DCPSQ96C86 337 aaKnown RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 HOOK2Q96ED9 719 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 CSRNP1Q96S65 589 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 MTA3Q9BTC8 594 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 TRIM34Q9BYJ4 488 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 UPF3BQ9BZI7 483 aaKnown RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 ALDH8A1Q9H2A2 487 aaPredicted RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 MKNK2Q9HBH9 465 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 TOMM22Q9NS69 142 aa12.69□□□□□ -0.38
SS18-213ENST00000579640 HERC5Q9UII4 1024 aaKnown RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 ASTN2O75129 1339 aaPredicted RBP12.69□□□□□ -0.38
SS18-213ENST00000579640 VEGFAP15692 232 aaPredicted RBP12.68□□□□□ -0.38
SS18-213ENST00000579640 CDK8P49336 464 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 MCM2P49736 904 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 RRP12Q5JTH9 1297 aaKnown RBP12.68□□□□□ -0.38
SS18-213ENST00000579640 CRACR2BQ8N4Y2 399 aaPredicted RBP12.68□□□□□ -0.38
SS18-213ENST00000579640 DYNLL2Q96FJ2 89 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 TMEM39BQ9GZU3 492 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 DEFB129Q9H1M3 183 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 PDRG1Q9NUG6 133 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 PGAP2Q9UHJ9 254 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 TACC3Q9Y6A5 838 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 SIPA1L1O43166 1804 aa12.68□□□□□ -0.38
SS18-213ENST00000579640 B4E1Z4 1266 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 SMIM22K7EJ46 135 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 TBC1D12O60347 775 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 KDM4AO75164 1064 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 EXOSC10Q01780 885 aaKnown RBP12.67□□□□□ -0.38
SS18-213ENST00000579640 EVX2Q03828 476 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 ZNF444Q8N0Y2 327 aaPredicted RBP12.67□□□□□ -0.38
SS18-213ENST00000579640 STK11IPQ8N1F8 1099 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 SNX21Q969T3 373 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 TTC14Q96N46 770 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 RANBP6O60518 1105 aaKnown RBP12.67□□□□□ -0.38
SS18-213ENST00000579640 ANKRD1Q15327 319 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 SULF1Q8IWU6 871 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 FBXL16Q8N461 479 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 TMEM87BQ96K49 555 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 TEPSINQ96N21 525 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 INCENPQ9NQS7 918 aa12.67□□□□□ -0.38
SS18-213ENST00000579640 MYH8P13535 1937 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 PRC1O43663 620 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 PRDM1O75626 825 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 CPA1P15085 419 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 RASA1P20936 1047 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 MAP3K10Q02779 954 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 SART3Q15020 963 aaKnown RBP12.66□□□□□ -0.38
SS18-213ENST00000579640 EAPPQ56P03 285 aaPredicted RBP12.66□□□□□ -0.38
SS18-213ENST00000579640 CCDC178Q5BJE1 867 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 IQCA1Q86XH1 822 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 SLC44A5Q8NCS7 719 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 CCDC17Q96LX7 622 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 ZSWIM5Q9P217 1185 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 UTRNP46939 3433 aa12.66□□□□□ -0.38
SS18-213ENST00000579640 TSPY2A6NKD2 308 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 SHMT1P34896 483 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 ANTXR2P58335 489 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 FGD1P98174 961 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 DCAF15Q66K64 600 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 TATDN1Q6P1N9 297 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 CYB5R4Q7L1T6 521 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 AGXT2Q9BYV1 514 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.65□□□□□ -0.38
SS18-213ENST00000579640 RRAGCQ9HB90 399 aa12.65□□□□□ -0.38
SS18-213ENST00000579640 PLIN4Q96Q06 1357 aa12.65□□□□□ -0.39
SS18-213ENST00000579640 ERICH2A1L162 156 aa12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms