RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 TMED8Q6PL24 325 aaPredicted RBP8.26□□□□□ -1.09
SMG1-215ENST00000568239 PHKBQ93100 1093 aa8.26□□□□□ -1.09
SMG1-215ENST00000568239 DYNLL2Q96FJ2 89 aa8.26□□□□□ -1.09
SMG1-215ENST00000568239 MKNK2Q9HBH9 465 aa8.26□□□□□ -1.09
SMG1-215ENST00000568239 TFIP11Q9UBB9 837 aaKnown RBP8.26□□□□□ -1.09
SMG1-215ENST00000568239 FAM205AQ6ZU69 1335 aa8.26□□□□□ -1.09
SMG1-215ENST00000568239 GADD45BO75293 160 aaPredicted RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 CDC27P30260 824 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 KRT85P78386 507 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 IFIT1BQ5T764 474 aaKnown RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 SGMS1Q86VZ5 419 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 CERS5Q8N5B7 392 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 GPT2Q8TD30 523 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 MAST2Q6P0Q8 1798 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 GPR75-ASB3A0A0A6YYF3 556 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 ECE2O60344 883 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 NMT2O60551 498 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 FDPSP14324 419 aaKnown RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 RBM5P52756 815 aaKnown RBP eCLIP8.25□□□□□ -1.09
SMG1-215ENST00000568239 PPP4CP60510 307 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 CEBPZQ03701 1054 aaKnown RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 PODNQ7Z5L7 613 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 KIAA0825Q8IV33 1275 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 CMTR1Q8N1G2 835 aaKnown RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 TMTC2Q8N394 836 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 TTLL6Q8N841 843 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 C8orf76Q96K31 380 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 ZSCAN10Q96SZ4 725 aaPredicted RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 GJB4Q9NTQ9 266 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 RBM27Q9P2N5 1060 aaKnown RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 DUOX1Q9NRD9 1551 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 CDKL5O76039 1030 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 PLCG2P16885 1265 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 IARSP41252 1262 aaKnown RBP8.25□□□□□ -1.09
SMG1-215ENST00000568239 PLCD1P51178 756 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 DAGLAQ9Y4D2 1042 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 LTBP1Q14766 1721 aa8.25□□□□□ -1.09
SMG1-215ENST00000568239 PPIP5K2O43314 1243 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 DPEP1P16444 411 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 PLCB2Q00722 1185 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 RTN1Q16799 776 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 CSPP1Q1MSJ5 1256 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 SBK1Q52WX2 424 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 C12orf60Q5U649 245 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 ZNF654Q8IZM8 581 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 ENAHQ8N8S7 591 aaPredicted RBP8.24□□□□□ -1.09
SMG1-215ENST00000568239 SLC44A5Q8NCS7 719 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 SLC26A6Q9BXS9 759 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 MTMR7Q9Y216 660 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 TIAM2Q8IVF5 1701 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 IGSF3O75054 1194 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 PCP11498 1178 aaKnown RBP8.24□□□□□ -1.09
SMG1-215ENST00000568239 TFAP4Q01664 338 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 SLC16A10Q8TF71 515 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 AIFM3Q96NN9 605 aa8.24□□□□□ -1.09
SMG1-215ENST00000568239 BAZ2BQ9UIF8 2168 aaKnown RBP8.24□□□□□ -1.09
SMG1-215ENST00000568239 SRCAPQ6ZRS2 3230 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 GOLGA6L3A6NEY3 463 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 MBD3O95983 291 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 TSPY3P0CV98 308 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 TSPY8P0CW00 308 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 RHBDL3P58872 404 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 CATIPQ7Z7H3 387 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 CERS3Q8IU89 383 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 ZNF444Q8N0Y2 327 aaPredicted RBP8.23□□□□□ -1.09
SMG1-215ENST00000568239 ALG1Q9BT22 464 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 ZSCAN16Q9H4T2 348 aaPredicted RBP8.23□□□□□ -1.09
SMG1-215ENST00000568239 MKRN1Q9UHC7 482 aaKnown RBP8.23□□□□□ -1.09
SMG1-215ENST00000568239 FLT1P17948 1338 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 GOLGA6L4A6NEF3 574 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 UBE2Q2LH0YL09 131 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 POLD1P28340 1107 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 SSRP1Q08945 709 aaKnown RBP8.23□□□□□ -1.09
SMG1-215ENST00000568239 GNL2Q13823 731 aaKnown RBP8.23□□□□□ -1.09
SMG1-215ENST00000568239 R3HDM1Q15032 1099 aaKnown RBP8.23□□□□□ -1.09
SMG1-215ENST00000568239 SEC23AQ15436 765 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 TRIM22Q8IYM9 498 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 FANCBQ8NB91 859 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 C7orf43Q8WVR3 580 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 TEKT1Q969V4 418 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 FAM163AQ96GL9 167 aaPredicted RBP8.23□□□□□ -1.09
SMG1-215ENST00000568239 SPATA32Q96LK8 384 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 USP40Q9NVE5 1235 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.23□□□□□ -1.09
SMG1-215ENST00000568239 SUGT1Q9Y2Z0 365 aa8.23□□□□□ -1.09
SMG1-215ENST00000568239 CCDC196A0A1B0GTZ2 297 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 ORC4O43929 436 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 RESTQ13127 1097 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 TRIM29Q14134 588 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 CCDC125Q86Z20 511 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 FAM217BQ9NTX9 383 aaPredicted RBP8.22□□□□□ -1.09
SMG1-215ENST00000568239 GAKO14976 1311 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 USP17L3A6NCW0 530 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 USP17L4A6NCW7 530 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 FGRP09769 529 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 UBE2HP62256 183 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 CCDC93Q567U6 631 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 STRIP1Q5VSL9 837 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 CC2D2BQ6DHV5 1058 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 USP17L1Q7RTZ2 530 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 212.9 ms