RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ZBTB12Q9Y330 459 aaPredicted RBP12.12□□□□□ -0.47
USP3-219ENST00000561326 GJA3Q9Y6H8 435 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 NEDD4P46934 1319 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 DHX16O60231 1041 aaKnown RBP12.11□□□□□ -0.47
USP3-219ENST00000561326 ENTPD3O75355 529 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 CYP2D6P10635 497 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 LIFRP42702 1097 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 EVCP57679 992 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 FKBP1CQ5VVH2 108 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 NFXL1Q6ZNB6 911 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 CYB5R4Q7L1T6 521 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 LARP6Q9BRS8 491 aaKnown RBP12.11□□□□□ -0.47
USP3-219ENST00000561326 OSBPL5Q9H0X9 879 aaPredicted RBP12.11□□□□□ -0.47
USP3-219ENST00000561326 TDRD3Q9H7E2 651 aaKnown RBP12.11□□□□□ -0.47
USP3-219ENST00000561326 INCENPQ9NQS7 918 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 CHMP5Q9NZZ3 219 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 TPCN1Q9ULQ1 816 aa12.11□□□□□ -0.47
USP3-219ENST00000561326 NAP1L2Q9ULW6 460 aaPredicted RBP12.11□□□□□ -0.47
USP3-219ENST00000561326 CCDC69A6NI79 296 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 TSPY2A6NKD2 308 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 H7C1D1 291 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 GRIN3BO60391 1043 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 PDIA4P13667 645 aaKnown RBP12.1□□□□□ -0.47
USP3-219ENST00000561326 ANTXR2P58335 489 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 APOBRQ0VD83 1088 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 WTAPQ15007 396 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 GPR162Q16538 588 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 ME3Q16798 604 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 FOXP4Q8IVH2 680 aaPredicted RBP12.1□□□□□ -0.47
USP3-219ENST00000561326 ZSCAN29Q8IWY8 852 aaPredicted RBP12.1□□□□□ -0.47
USP3-219ENST00000561326 GPC2Q8N158 579 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 IGDCC4Q8TDY8 1250 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 TRIM34Q9BYJ4 488 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 MYOZ2Q9NPC6 264 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 FOXD4L1Q9NU39 408 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 PI4KBQ9UBF8 816 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 SWAP70Q9UH65 585 aa12.1□□□□□ -0.47
USP3-219ENST00000561326 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP3-219ENST00000561326 DDX60LQ5H9U9 1706 aaKnown RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 ROBO3Q96MS0 1386 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 POLR2AP24928 1970 aaKnown RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 KLF18A0A0U1RQI7 1052 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 SH2B2O14492 632 aaPredicted RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 PFKFB2O60825 505 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 TNNI2P48788 182 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 CDK8P49336 464 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 GMPSP49915 693 aaPredicted RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 PLCD1P51178 756 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 ZNF280AP59817 542 aaPredicted RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 COL9A3Q14050 684 aaPredicted RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 C16orf86Q6ZW13 317 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 LLPHQ9BRT6 129 aaKnown RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 ZNF70Q9UC06 446 aaPredicted RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 CNOT7Q9UIV1 285 aaKnown RBP12.09□□□□□ -0.47
USP3-219ENST00000561326 SERPINB13Q9UIV8 391 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 SMC3Q9UQE7 1217 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 MYH6P13533 1939 aa12.09□□□□□ -0.47
USP3-219ENST00000561326 PRDM1O75626 825 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 TSPY3P0CV98 308 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 TSPY8P0CW00 308 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 YBX3P16989 372 aaKnown RBP eCLIP12.08□□□□□ -0.483e-6■■■□□ 16.3
USP3-219ENST00000561326 PDIA3P30101 505 aaKnown RBP12.08□□□□□ -0.48
USP3-219ENST00000561326 PRELPP51888 382 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 NUCB2P80303 420 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 TFAP4Q01664 338 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 TCP10Q12799 353 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 STK3Q13188 491 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 PPP2R5BQ15173 497 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 SLC4A8Q2Y0W8 1093 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 CPLX2Q6PUV4 134 aaKnown RBP12.08□□□□□ -0.48
USP3-219ENST00000561326 SGMS1Q86VZ5 419 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 CCDC83Q8IWF9 413 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 CRACR2BQ8N4Y2 399 aaPredicted RBP12.08□□□□□ -0.48
USP3-219ENST00000561326 NECAB1Q8N987 351 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 DYNLL2Q96FJ2 89 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 ZSCAN10Q96SZ4 725 aaPredicted RBP12.08□□□□□ -0.48
USP3-219ENST00000561326 EHD4Q9H223 541 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 DDX4Q9NQI0 724 aaKnown RBP12.08□□□□□ -0.48
USP3-219ENST00000561326 FAM198AQ9UFP1 575 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 KIF3AQ9Y496 699 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 SLC12A7Q9Y666 1083 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 TACC3Q9Y6A5 838 aa12.08□□□□□ -0.48
USP3-219ENST00000561326 ZBTB43O43298 467 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 CALM1P0DP23 149 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 CALM2P0DP24 149 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 CALM3P0DP25 149 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 CACNB3P54284 484 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 NFIAQ12857 509 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 TNFAIP1Q13829 316 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 SPDYE2Q495Y8 402 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 PPP4R3BQ5MIZ7 849 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 IFIT1BQ5T764 474 aaKnown RBP12.07□□□□□ -0.48
USP3-219ENST00000561326 DPY19L2Q6NUT2 758 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 CATIPQ7Z7H3 387 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 FAM83AQ86UY5 434 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 MICALL2Q8IY33 904 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 FAM151AQ8WW52 585 aa12.07□□□□□ -0.48
USP3-219ENST00000561326 GTF3C6Q969F1 213 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms