RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 COA1Q9GZY4 146 aa30.69■■■□□ 2.5
CCDC88C-205ENST00000553403 MKRN1Q9UHC7 482 aaKnown RBP30.69■■■□□ 2.5
CCDC88C-205ENST00000553403 CCDC196A0A1B0GTZ2 297 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 SMIM22K7EJ46 135 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 PPP2R5BQ15173 497 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 ZSCAN10Q96SZ4 725 aaPredicted RBP30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 MYL10Q9BUA6 226 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 TNKSO95271 1327 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 IFNAR1P17181 557 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 RTN1Q16799 776 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 IQCA1Q86XH1 822 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 SLF2Q8IX21 1173 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 ALG1Q9BT22 464 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 PANK2Q9BZ23 570 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 MTFR1LQ9H019 292 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 RCOR1Q9UKL0 485 aa30.68■■■□□ 2.5
CCDC88C-205ENST00000553403 GOLGA6L4A6NEF3 574 aa30.67■■■□□ 2.5
CCDC88C-205ENST00000553403 BRAPQ7Z569 592 aa30.67■■■□□ 2.5
CCDC88C-205ENST00000553403 ZNF654Q8IZM8 581 aa30.67■■■□□ 2.5
CCDC88C-205ENST00000553403 MPNDQ8N594 471 aa30.67■■■□□ 2.5
CCDC88C-205ENST00000553403 COL11A2P13942 1736 aaPredicted RBP30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 RANBP6O60518 1105 aaKnown RBP30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 USP5P45974 858 aa30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 SSRP1Q08945 709 aaKnown RBP30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 DIXDC1Q155Q3 683 aa30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 CCDC144CPQ8IYA2 1237 aa30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 SH3RF3Q8TEJ3 882 aaPredicted RBP30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 FAM163AQ96GL9 167 aaPredicted RBP30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 RTFDC1Q9BY42 306 aaPredicted RBP30.66■■■□□ 2.5
CCDC88C-205ENST00000553403 FMNL1O95466 1100 aaPredicted RBP30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 PDE4BQ07343 736 aa30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 WASF1Q92558 559 aa30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 TMX4Q9H1E5 349 aaPredicted RBP30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 MCM9Q9NXL9 1143 aa30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 NASPP49321 788 aaPredicted RBP30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 MSL1Q68DK7 614 aa30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 OTUD7BQ6GQQ9 843 aa30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 ENAHQ8N8S7 591 aaPredicted RBP30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 RBSNQ9H1K0 784 aa30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 TSPY26PQ9H489 355 aa30.65■■■□□ 2.5
CCDC88C-205ENST00000553403 DLEC1Q9Y238 1755 aa30.64■■■□□ 2.5
CCDC88C-205ENST00000553403 GPR75-ASB3A0A0A6YYF3 556 aa30.64■■■□□ 2.5
CCDC88C-205ENST00000553403 MFSD14BQ5SR56 506 aa30.64■■■□□ 2.5
CCDC88C-205ENST00000553403 C12orf60Q5U649 245 aa30.64■■■□□ 2.5
CCDC88C-205ENST00000553403 PHKBQ93100 1093 aa30.64■■■□□ 2.5
CCDC88C-205ENST00000553403 SUGT1Q9Y2Z0 365 aa30.64■■■□□ 2.5
CCDC88C-205ENST00000553403 MYH2Q9UKX2 1941 aa30.63■■■□□ 2.49
CCDC88C-205ENST00000553403 CYP2D6P10635 497 aa30.63■■■□□ 2.49
CCDC88C-205ENST00000553403 PLCG2P16885 1265 aa30.63■■■□□ 2.49
CCDC88C-205ENST00000553403 FANCBQ8NB91 859 aa30.63■■■□□ 2.49
CCDC88C-205ENST00000553403 PGBD1Q96JS3 809 aa30.63■■■□□ 2.49
CCDC88C-205ENST00000553403 ROBO3Q96MS0 1386 aa30.63■■■□□ 2.49
CCDC88C-205ENST00000553403 KIF23Q02241 960 aaPredicted RBP30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 STYK1Q6J9G0 422 aa30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 AMOTL1Q8IY63 956 aa30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 USP28Q96RU2 1077 aa30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 ZC3H12CQ9C0D7 883 aaKnown RBP30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 QSER1Q2KHR3 1735 aa30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 PRDM1O75626 825 aa30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 TPRNQ4KMQ1 711 aa30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 IFIT1BQ5T764 474 aaKnown RBP30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 DPP8Q6V1X1 898 aaPredicted RBP30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 RTEL1Q9NZ71 1219 aa30.62■■■□□ 2.49
CCDC88C-205ENST00000553403 GAKO14976 1311 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 DCAF8L1A6NGE4 600 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 USP17L8P0C7I0 530 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 CALM1P0DP23 149 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 CALM2P0DP24 149 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 CALM3P0DP25 149 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 BTDP43251 543 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 TRIM22Q8IYM9 498 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 SLC26A6Q9BXS9 759 aa30.61■■■□□ 2.49
CCDC88C-205ENST00000553403 TRIM29Q14134 588 aa30.6■■■□□ 2.49
CCDC88C-205ENST00000553403 KRT40Q6A162 431 aa30.6■■■□□ 2.49
CCDC88C-205ENST00000553403 CATIPQ7Z7H3 387 aa30.6■■■□□ 2.49
CCDC88C-205ENST00000553403 C2CD5Q86YS7 1000 aa30.6■■■□□ 2.49
CCDC88C-205ENST00000553403 ECM29Q5VYK3 1845 aa30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 RIMBP2O15034 1052 aa30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 LIG1P18858 919 aa30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 CRACR2BQ8N4Y2 399 aaPredicted RBP30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 SLC16A10Q8TF71 515 aa30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 NUP133Q8WUM0 1156 aa30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 EYA3Q99504 573 aa30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 DDX19AQ9NUU7 478 aaKnown RBP30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 NAV1Q8NEY1 1877 aa30.59■■■□□ 2.49
CCDC88C-205ENST00000553403 DDAH1O94760 285 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 EVX2Q03828 476 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 NBPF11Q86T75 865 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 TGFBRAP1Q8WUH2 860 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 AIFM3Q96NN9 605 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 H0YIN7 160 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 PTGER2P43116 358 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 GTF2IP78347 998 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 MYSM1Q5VVJ2 828 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 ZNF622Q969S3 477 aaKnown RBP eCLIP30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 GJB4Q9NTQ9 266 aa30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 RBM28Q9NW13 759 aaKnown RBP30.58■■■□□ 2.49
CCDC88C-205ENST00000553403 BICD2Q8TD16 824 aa30.57■■■□□ 2.48
CCDC88C-205ENST00000553403 KIF28PB7ZC32 967 aa30.56■■■□□ 2.48
CCDC88C-205ENST00000553403 DEXIO95424 95 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms