RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CORO7P57737 925 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 VGLL2Q8N8G2 317 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 RBM28Q9NW13 759 aaKnown RBP6.06□□□□□ -1.44
USP28-213ENST00000544967 PDS5AQ29RF7 1337 aaKnown RBP6.06□□□□□ -1.44
USP28-213ENST00000544967 MAP2K7O14733 419 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 TADA3O75528 432 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 SATB1Q01826 763 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 SNW1Q13573 536 aaKnown RBP6.06□□□□□ -1.44
USP28-213ENST00000544967 IQCB1Q15051 598 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 LRRFIP1Q32MZ4 808 aaKnown RBP6.06□□□□□ -1.44
USP28-213ENST00000544967 VPS53Q5VIR6 699 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 LEKR1Q6ZMV7 388 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 MMS22LQ6ZRQ5 1243 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 TTLL11Q8NHH1 800 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 ATL2Q8NHH9 583 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 DDX11Q96FC9 970 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 ZBTB3Q9H5J0 574 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 SMC3Q9UQE7 1217 aa6.06□□□□□ -1.44
USP28-213ENST00000544967 SKILP12757 684 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 CALRP27797 417 aaKnown RBP6.05□□□□□ -1.44
USP28-213ENST00000544967 APLP1P51693 650 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 GRAPQ13588 217 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 SPC24Q8NBT2 197 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 GRAPLQ8TC17 118 aaPredicted RBP6.05□□□□□ -1.44
USP28-213ENST00000544967 MPHOSPH8Q99549 860 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 TNMDQ9H2S6 317 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 SERPINA10Q9UK55 444 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 MED23Q9ULK4 1368 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 CCDC151A5D8V7 595 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 ZRSR1Q15695 479 aaKnown RBP6.05□□□□□ -1.44
USP28-213ENST00000544967 STX1AQ16623 288 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 REXO1L1PQ8IX06 675 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 SP8Q8IXZ3 490 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 NLGN2Q8NFZ4 835 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 UBXN4Q92575 508 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 RABGGTAQ92696 567 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 MYD88Q99836 296 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 ZSCAN16Q9H4T2 348 aaPredicted RBP6.05□□□□□ -1.44
USP28-213ENST00000544967 RAI14Q9P0K7 980 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 ATP6V0A2Q9Y487 856 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 SEMA3EO15041 775 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 C21orf2O43822 256 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 BBOX1O75936 387 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 TBC1D8O95759 1140 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 USP5P45974 858 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 ETF1P62495 437 aaKnown RBP6.05□□□□□ -1.44
USP28-213ENST00000544967 NEXNQ0ZGT2 675 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 LRMPQ12912 555 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 ANO6Q4KMQ2 910 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 CC2D1AQ6P1N0 951 aaPredicted RBP6.05□□□□□ -1.44
USP28-213ENST00000544967 RIC3Q7Z5B4 369 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 NBPF5PQ86XG9 351 aaPredicted RBP6.05□□□□□ -1.44
USP28-213ENST00000544967 DRC7Q8IY82 874 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 SMARCE1Q969G3 411 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 CNKSR1Q969H4 720 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 GABBR1Q9UBS5 961 aa6.05□□□□□ -1.44
USP28-213ENST00000544967 LAMA4Q16363 1823 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 SH3BP5O60239 455 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 DPEP1P16444 411 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 OAS2P29728 719 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 ZNF165P49910 485 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 SMC1AQ14683 1233 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 CCDC181Q5TID7 509 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 TSPAN18Q96SJ8 248 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 UBA5Q9GZZ9 404 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 A0A087WUV0 522 aaPredicted RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 CCDC69A6NI79 296 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 GOLGA6L19H0YKK7 550 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 YBX3P16989 372 aaKnown RBP eCLIP6.04□□□□□ -1.44
USP28-213ENST00000544967 CASTP20810 708 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 ALDH1B1P30837 517 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 TSGA10IPQ3SY00 556 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 ARHGAP29Q52LW3 1261 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 RSRC2Q7L4I2 434 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 RBM17Q96I25 401 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 MAF1Q9H063 256 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 COPRSQ9NQ92 184 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 BSDC1Q9NW68 430 aaPredicted RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 GOLGA6CA6NDK9 693 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 GOLGA6BA6NDN3 693 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 TMCO5BA8MYB1 307 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 IRS4O14654 1257 aaPredicted RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 EIF3JO75822 258 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 GOLGA6DP0CG33 693 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 NAA30Q147X3 362 aaPredicted RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 SKIV2LQ15477 1246 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 CWF19L2Q2TBE0 894 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 CCDC144BQ3MJ40 725 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 MSL1Q68DK7 614 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 ZNF280DQ6N043 979 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 ERC1Q8IUD2 1116 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 CCDC144CPQ8IYA2 1237 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 RBM46Q8TBY0 533 aaKnown RBP6.04□□□□□ -1.44
USP28-213ENST00000544967 SSH3Q8TE77 659 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 PPP1R13BQ96KQ4 1090 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 ARFGAP3Q9NP61 516 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 GOLGA6AQ9NYA3 693 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 PIM2Q9P1W9 311 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 TRPM7Q96QT4 1865 aa6.04□□□□□ -1.44
USP28-213ENST00000544967 ARID4AP29374 1257 aaPredicted RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms