RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TNKSO95271 1327 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 PRDM1O75626 825 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 GUCY1B3Q02153 619 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 CCDC144CPQ8IYA2 1237 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 ZSCAN10Q96SZ4 725 aaPredicted RBP24.17■■□□□ 1.46
VPS28-209ENST00000528142 GRPEL1Q9HAV7 217 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 MCM9Q9NXL9 1143 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 ATF5Q9Y2D1 282 aaPredicted RBP24.17■■□□□ 1.46
VPS28-209ENST00000528142 H0YIN7 160 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 USP17L8P0C7I0 530 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 GTF2IP78347 998 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 C12orf60Q5U649 245 aa24.17■■□□□ 1.46
VPS28-209ENST00000528142 LEO1Q8WVC0 666 aaPredicted RBP24.17■■□□□ 1.46
VPS28-209ENST00000528142 SYAP1Q96A49 352 aaPredicted RBP24.17■■□□□ 1.46
VPS28-209ENST00000528142 NOL10Q9BSC4 688 aaKnown RBP24.17■■□□□ 1.46
VPS28-209ENST00000528142 PSDA5PKW4 1024 aaPredicted RBP24.16■■□□□ 1.46
VPS28-209ENST00000528142 RANBP6O60518 1105 aaKnown RBP24.16■■□□□ 1.46
VPS28-209ENST00000528142 SLC3A2P08195 630 aaKnown RBP24.16■■□□□ 1.46
VPS28-209ENST00000528142 BTDP43251 543 aa24.16■■□□□ 1.46
VPS28-209ENST00000528142 USP5P45974 858 aa24.16■■□□□ 1.46
VPS28-209ENST00000528142 ENAHQ8N8S7 591 aaPredicted RBP24.16■■□□□ 1.46
VPS28-209ENST00000528142 GAKO14976 1311 aa24.15■■□□□ 1.46
VPS28-209ENST00000528142 OTUD7BQ6GQQ9 843 aa24.15■■□□□ 1.46
VPS28-209ENST00000528142 ZNF654Q8IZM8 581 aa24.15■■□□□ 1.46
VPS28-209ENST00000528142 SPATA32Q96LK8 384 aa24.15■■□□□ 1.46
VPS28-209ENST00000528142 TMX4Q9H1E5 349 aaPredicted RBP24.15■■□□□ 1.46
VPS28-209ENST00000528142 SLF2Q8IX21 1173 aa24.14■■□□□ 1.46
VPS28-209ENST00000528142 CFAP45Q9UL16 551 aa24.14■■□□□ 1.46
VPS28-209ENST00000528142 SUGT1Q9Y2Z0 365 aa24.14■■□□□ 1.46
VPS28-209ENST00000528142 IFNAR1P17181 557 aa24.14■■□□□ 1.45
VPS28-209ENST00000528142 IARSP41252 1262 aaKnown RBP24.14■■□□□ 1.45
VPS28-209ENST00000528142 PHKBQ93100 1093 aa24.14■■□□□ 1.45
VPS28-209ENST00000528142 SLX4Q8IY92 1834 aa24.14■■□□□ 1.45
VPS28-209ENST00000528142 STK36Q9NRP7 1315 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 SYCE3A1L190 88 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 PDE4BQ07343 736 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 RTN1Q16799 776 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 ATL3Q6DD88 541 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 IQCA1Q86XH1 822 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 FANCBQ8NB91 859 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 TGFBRAP1Q8WUH2 860 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 ALG1Q9BT22 464 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 GJB4Q9NTQ9 266 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 LAMB1P07942 1786 aa24.13■■□□□ 1.45
VPS28-209ENST00000528142 ROBO3Q96MS0 1386 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 RHBDL3P58872 404 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 AIFM3Q96NN9 605 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 EYA3Q99504 573 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 FMNL1O95466 1100 aaPredicted RBP24.12■■□□□ 1.45
VPS28-209ENST00000528142 PLCG2P16885 1265 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 NT5C2P49902 561 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 DOK7Q18PE1 504 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 LRSAM1Q6UWE0 723 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 CERS5Q8N5B7 392 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 SGIP1Q9BQI5 828 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 MTFR1LQ9H019 292 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 KIF13BQ9NQT8 1826 aa24.12■■□□□ 1.45
VPS28-209ENST00000528142 CCDC196A0A1B0GTZ2 297 aa24.11■■□□□ 1.45
VPS28-209ENST00000528142 CNKSR1Q969H4 720 aa24.11■■□□□ 1.45
VPS28-209ENST00000528142 SSRP1Q08945 709 aaKnown RBP24.1■■□□□ 1.45
VPS28-209ENST00000528142 PPP2R5BQ15173 497 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 CCDC183Q5T5S1 534 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 IFIT1BQ5T764 474 aaKnown RBP24.1■■□□□ 1.45
VPS28-209ENST00000528142 NBPF11Q86T75 865 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 C7orf43Q8WVR3 580 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 ZNF396Q96N95 335 aaPredicted RBP24.1■■□□□ 1.45
VPS28-209ENST00000528142 RCOR1Q9UKL0 485 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 MYH2Q9UKX2 1941 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 KCNA3P22001 575 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 TPRNQ4KMQ1 711 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 FAM47AQ5JRC9 791 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 MAPKAPK5Q8IW41 473 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 DAGLAQ9Y4D2 1042 aa24.1■■□□□ 1.45
VPS28-209ENST00000528142 KIF23Q02241 960 aaPredicted RBP24.09■■□□□ 1.45
VPS28-209ENST00000528142 TEX11Q8IYF3 940 aa24.09■■□□□ 1.45
VPS28-209ENST00000528142 CRACR2BQ8N4Y2 399 aaPredicted RBP24.09■■□□□ 1.45
VPS28-209ENST00000528142 NUP133Q8WUM0 1156 aa24.09■■□□□ 1.45
VPS28-209ENST00000528142 PGBD1Q96JS3 809 aa24.09■■□□□ 1.45
VPS28-209ENST00000528142 USP28Q96RU2 1077 aa24.09■■□□□ 1.45
VPS28-209ENST00000528142 SLC26A6Q9BXS9 759 aa24.09■■□□□ 1.45
VPS28-209ENST00000528142 DLEC1Q9Y238 1755 aa24.09■■□□□ 1.45
VPS28-209ENST00000528142 SLC4A8Q2Y0W8 1093 aa24.08■■□□□ 1.45
VPS28-209ENST00000528142 KRT40Q6A162 431 aa24.08■■□□□ 1.45
VPS28-209ENST00000528142 DYNLL2Q96FJ2 89 aa24.08■■□□□ 1.45
VPS28-209ENST00000528142 KIF28PB7ZC32 967 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 UBE2Q2LH0YL09 131 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 NMT2O60551 498 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 PLCD1P51178 756 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 TROAPQ12815 778 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 BRAPQ7Z569 592 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 PODNQ7Z5L7 613 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 CATIPQ7Z7H3 387 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 AMOTL1Q8IY63 956 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 PANK2Q9BZ23 570 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 FTOQ9C0B1 505 aaKnown RBP eCLIP24.07■■□□□ 1.441e-6■■□□□ 11.8
VPS28-209ENST00000528142 WASF1Q92558 559 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 FBXW7Q969H0 707 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 FLT1P17948 1338 aa24.07■■□□□ 1.44
VPS28-209ENST00000528142 TSPY2A6NKD2 308 aa24.06■■□□□ 1.44
VPS28-209ENST00000528142 DDAH1O94760 285 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms