RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CLEC11AQ9Y240 323 aa10.13□□□□□ -0.79
LIMCH1-209ENST00000509277 DCAF8L1A6NGE4 600 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 GMPSP49915 693 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 CCT2P78371 535 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 KLHL40Q2TBA0 621 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 SLF2Q8IX21 1173 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 NEK1Q96PY6 1258 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 GSG1L2A8MUP6 293 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 PATL2C9JE40 543 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 TNNT1P13805 278 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 HSPA4P34932 840 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 NFIAQ12857 509 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 RAB3GAP1Q15042 981 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 NUP133Q8WUM0 1156 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 BRF1Q92994 677 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 ZNF512BQ96KM6 892 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 EPB41L4AQ9HCS5 686 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 MYH13Q9UKX3 1938 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 TCRBV5S4A2TA0A5A2 114 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 DACT2Q5SW24 774 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 STRIP1Q5VSL9 837 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 MFSD6Q6ZSS7 791 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 IPO4Q8TEX9 1081 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 PRMT6Q96LA8 375 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 MYL10Q9BUA6 226 aa10.12□□□□□ -0.79
LIMCH1-209ENST00000509277 GTF2F1P35269 517 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 MIGA2Q7L4E1 593 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 MICALL2Q8IY33 904 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 MROH7-TTC4A0A0A0MT08 1334 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 TSPY2A6NKD2 308 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 E7EWF7 191 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 LETM1O95202 739 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 EGFRP00533 1210 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 RABEP1Q15276 862 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 NBPF9Q3BBW0 867 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 ZNF408Q9H9D4 720 aa10.11□□□□□ -0.79
LIMCH1-209ENST00000509277 RSBN1LQ6PCB5 846 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 DLK2Q6UY11 383 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 Q6ZUG5 572 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 TBC1D10CQ8IV04 446 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 CCDC83Q8IWF9 413 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 ZNF541Q9H0D2 1346 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 TMEM63CQ9P1W3 806 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 CNOT7Q9UIV1 285 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 STX8Q9UNK0 236 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 FZD1Q9UP38 647 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 PSMA5P28066 241 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 AK2P54819 239 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 PPARAQ07869 468 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 APOBRQ0VD83 1088 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 STOX1Q6ZVD7 989 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 DDX11Q96FC9 970 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 PSMD1Q99460 953 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 TSPY26PQ9H489 355 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 CASZ1Q86V15 1759 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 ASTN2O75129 1339 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 RIOK3O14730 519 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 IFIT3O14879 490 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 POLR3GO15318 223 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 MYO1BO43795 1136 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 LMNB1P20700 586 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 PRELPP51888 382 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 TNIP1Q15025 636 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 NECTIN1Q15223 517 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 DHX37Q8IY37 1157 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 PPP1R9BQ96SB3 815 aa10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 DCP1AQ9NPI6 582 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-209ENST00000509277 H7C1D1 291 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 FIBPO43427 364 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 CDC42EP5Q6NZY7 148 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 MICU3Q86XE3 530 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 CLEC10AQ8IUN9 316 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 ZFPM1Q8IX07 1006 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 RIOK1Q9BRS2 568 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 UBAC1Q9BSL1 405 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 DSCC1Q9BVC3 393 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 CHD4Q14839 1912 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 ERICH2A1L162 156 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 PRC1O43663 620 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 ADCY5O95622 1261 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 LMOD1P29536 600 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 EPS15P42566 896 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 PLCD1P51178 756 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 HMGN5P82970 282 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 ZNF444Q8N0Y2 327 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 GPATCH11Q8N954 259 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 RTFDC1Q9BY42 306 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 RGPD3A6NKT7 1758 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 RGPD4Q7Z3J3 1758 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 NMT2O60551 498 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 KIF20AO95235 890 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 NCOA7Q8NI08 942 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 KIF2CQ99661 725 aa10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 NCOA5Q9HCD5 579 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-209ENST00000509277 AKAP11Q9UKA4 1901 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 GNAT2P19087 354 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 IRX3P78415 501 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 ZYXQ15942 572 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 GTPBP4Q9BZE4 634 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 DDX4Q9NQI0 724 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms