RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 RCAN1P53805 252 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 SOGA3Q5TF21 947 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 USP17L1Q7RTZ2 530 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 MAPKAPK5Q8IW41 473 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 CHAMP1Q96JM3 812 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 ZKSCAN3Q9BRR0 538 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 PIM2Q9P1W9 311 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 TNKSO95271 1327 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 SIPA1L1O43166 1804 aa11.07□□□□□ -0.64
SF3B1-211ENST00000487698 F8W031 263 aaPredicted RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 GOLGA6L22H0YM25 854 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 PRDM1O75626 825 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 FDPSP14324 419 aaKnown RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 PDE4BQ07343 736 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 WTAPQ15007 396 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 MCTP1Q6DN14 999 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 CDC37L1Q7L3B6 337 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 TEKT1Q969V4 418 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 DDX11Q96FC9 970 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 UBAC1Q9BSL1 405 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 ERICH2A1L162 156 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 VPS37CA5D8V6 355 aaPredicted RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 ZBTB43O43298 467 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 RANBP6O60518 1105 aaKnown RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 METAP2P50579 478 aaKnown RBP eCLIP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 SCNN1DP51172 638 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 HDLBPQ00341 1268 aaKnown RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 APOBEC3HQ6NTF7 200 aaKnown RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 NFXL1Q6ZNB6 911 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 RAB11FIP4Q86YS3 637 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 AMOTL1Q8IY63 956 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 TMTC2Q8N394 836 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 ENAHQ8N8S7 591 aaPredicted RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 ZDHHC15Q96MV8 337 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 ZSCAN10Q96SZ4 725 aaPredicted RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 VPS33BQ9H267 617 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 FAM217BQ9NTX9 383 aaPredicted RBP11.06□□□□□ -0.64
SF3B1-211ENST00000487698 SLC12A7Q9Y666 1083 aa11.06□□□□□ -0.64
SF3B1-211ENST00000487698 CCDC69A6NI79 296 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 WDHD1O75717 1129 aaPredicted RBP11.05□□□□□ -0.64
SF3B1-211ENST00000487698 CDC27P30260 824 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 PTGER2P43116 358 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 PLCD1P51178 756 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 MICU3Q86XE3 530 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 LMBRD1Q9NUN5 540 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 KIF3AQ9Y496 699 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 CD2APQ9Y5K6 639 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 TRAK2O60296 914 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 RXRAP19793 462 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 CRKP46108 304 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 NTRK3Q16288 839 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 SLC4A8Q2Y0W8 1093 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 DALRD3Q5D0E6 543 aaKnown RBP11.05□□□□□ -0.64
SF3B1-211ENST00000487698 IQCA1Q86XH1 822 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 KIAA0825Q8IV33 1275 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 FAM184AQ8NB25 1140 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 MYL10Q9BUA6 226 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 SAP30BPQ9UHR5 308 aaKnown RBP11.05□□□□□ -0.64
SF3B1-211ENST00000487698 ATP6V1DQ9Y5K8 247 aa11.05□□□□□ -0.64
SF3B1-211ENST00000487698 GREB1LQ9C091 1923 aaPredicted RBP11.04□□□□□ -0.64
SF3B1-211ENST00000487698 GOLGA8AA7E2F4 631 aa11.04□□□□□ -0.64
SF3B1-211ENST00000487698 ADD1P35611 737 aaKnown RBP11.04□□□□□ -0.64
SF3B1-211ENST00000487698 CDC42EP5Q6NZY7 148 aa11.04□□□□□ -0.64
SF3B1-211ENST00000487698 C16orf86Q6ZW13 317 aa11.04□□□□□ -0.64
SF3B1-211ENST00000487698 ZNF654Q8IZM8 581 aa11.04□□□□□ -0.64
SF3B1-211ENST00000487698 DYNLL2Q96FJ2 89 aa11.04□□□□□ -0.64
SF3B1-211ENST00000487698 DDX4Q9NQI0 724 aaKnown RBP11.04□□□□□ -0.64
SF3B1-211ENST00000487698 ZNF277Q9NRM2 450 aaPredicted RBP11.04□□□□□ -0.64
SF3B1-211ENST00000487698 SERPINA10Q9UK55 444 aa11.04□□□□□ -0.64
SF3B1-211ENST00000487698 PSDA5PKW4 1024 aaPredicted RBP11.03□□□□□ -0.64
SF3B1-211ENST00000487698 CPLX1O14810 134 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 CDKL5O76039 1030 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 POLR3DP05423 398 aaPredicted RBP11.03□□□□□ -0.64
SF3B1-211ENST00000487698 FAM47AQ5JRC9 791 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 LARGE2Q8N3Y3 721 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 TMEM87AQ8NBN3 555 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 RGS22Q8NE09 1264 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 USP40Q9NVE5 1235 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 NMT2O60551 498 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 RASA1P20936 1047 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 SKOR2Q2VWA4 1001 aaPredicted RBP11.03□□□□□ -0.64
SF3B1-211ENST00000487698 RCSD1Q6JBY9 416 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 SYNE3Q6ZMZ3 975 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 SLC44A5Q8NCS7 719 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 MYO3BQ8WXR4 1341 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 STK36Q9NRP7 1315 aa11.03□□□□□ -0.64
SF3B1-211ENST00000487698 TSPY2A6NKD2 308 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 PPFIA3O75145 1194 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 VIL1P09327 827 aaKnown RBP11.02□□□□□ -0.64
SF3B1-211ENST00000487698 IFNAR1P17181 557 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 IARSP41252 1262 aaKnown RBP11.02□□□□□ -0.64
SF3B1-211ENST00000487698 RESTQ13127 1097 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 IFIT1BQ5T764 474 aaKnown RBP11.02□□□□□ -0.64
SF3B1-211ENST00000487698 FERMT3Q86UX7 667 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 CCDC144CPQ8IYA2 1237 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 ANKS1AQ92625 1134 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 GMLQ99445 158 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 ZNF287Q9HBT7 754 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 TCP11L1Q9NUJ3 509 aa11.02□□□□□ -0.64
SF3B1-211ENST00000487698 ORC3Q9UBD5 711 aaPredicted RBP11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 250.7 ms