RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 ZKSCAN3Q9BRR0 538 aa16.44■□□□□ 0.22
CLK3-204ENST00000483723 KCNQ5Q9NR82 932 aa16.44■□□□□ 0.22
CLK3-204ENST00000483723 ZNF219Q9P2Y4 722 aaPredicted RBP16.44■□□□□ 0.22
CLK3-204ENST00000483723 TTF2Q9UNY4 1162 aaKnown RBP16.44■□□□□ 0.22
CLK3-204ENST00000483723 SLC12A7Q9Y666 1083 aa16.44■□□□□ 0.22
CLK3-204ENST00000483723 CDC27P30260 824 aa16.43■□□□□ 0.22
CLK3-204ENST00000483723 ADD1P35611 737 aaKnown RBP16.43■□□□□ 0.22
CLK3-204ENST00000483723 HDLBPQ00341 1268 aaKnown RBP16.43■□□□□ 0.22
CLK3-204ENST00000483723 CCDC93Q567U6 631 aa16.43■□□□□ 0.22
CLK3-204ENST00000483723 PSMD1Q99460 953 aa16.43■□□□□ 0.22
CLK3-204ENST00000483723 UBAC1Q9BSL1 405 aa16.43■□□□□ 0.22
CLK3-204ENST00000483723 MXD3Q9BW11 206 aa16.43■□□□□ 0.22
CLK3-204ENST00000483723 MTFR1LQ9H019 292 aa16.43■□□□□ 0.22
CLK3-204ENST00000483723 MYH1P12882 1939 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 CPLX1O14810 134 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 RESTQ13127 1097 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 PPP2R5BQ15173 497 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 SYNE3Q6ZMZ3 975 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 IQCA1Q86XH1 822 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 RAB11FIP4Q86YS3 637 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 ENAHQ8N8S7 591 aaPredicted RBP16.42■□□□□ 0.22
CLK3-204ENST00000483723 VPS33BQ9H267 617 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 ZSCAN16Q9H4T2 348 aaPredicted RBP16.42■□□□□ 0.22
CLK3-204ENST00000483723 TNKSO95271 1327 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 PSME4Q14997 1843 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 USP17L3A6NCW0 530 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 USP17L4A6NCW7 530 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 GOLGA8AA7E2F4 631 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 RANBP6O60518 1105 aaKnown RBP16.42■□□□□ 0.22
CLK3-204ENST00000483723 PRDM1O75626 825 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 CDKL5O76039 1030 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 CPLX2Q6PUV4 134 aaKnown RBP16.42■□□□□ 0.22
CLK3-204ENST00000483723 USP17L1Q7RTZ2 530 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 MAPKAPK5Q8IW41 473 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 AMOTL1Q8IY63 956 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 FBXW7Q969H0 707 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 ORC3Q9UBD5 711 aaPredicted RBP16.42■□□□□ 0.22
CLK3-204ENST00000483723 DDX49Q9Y6V7 483 aaKnown RBP16.42■□□□□ 0.22
CLK3-204ENST00000483723 FLT1P17948 1338 aa16.42■□□□□ 0.22
CLK3-204ENST00000483723 ZBTB7AO95365 584 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 PLCD1P51178 756 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 DNM1Q05193 864 aaKnown RBP16.41■□□□□ 0.22
CLK3-204ENST00000483723 AOC3Q16853 763 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 USP48Q86UV5 1035 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 MICU3Q86XE3 530 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 ZNF654Q8IZM8 581 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 ANKS1AQ92625 1134 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 CNPY2Q9Y2B0 182 aa16.41■□□□□ 0.22
CLK3-204ENST00000483723 H3BQV1 296 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 IFNAR1P17181 557 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 RXRAP19793 462 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 FOXD4L6Q3SYB3 417 aaPredicted RBP16.4■□□□□ 0.22
CLK3-204ENST00000483723 IFFO2Q5TF58 517 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 APOBEC3HQ6NTF7 200 aaKnown RBP16.4■□□□□ 0.22
CLK3-204ENST00000483723 FOXD4L3Q6VB84 417 aaPredicted RBP16.4■□□□□ 0.22
CLK3-204ENST00000483723 GPT2Q8TD30 523 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 TEKT1Q969V4 418 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 ZDHHC15Q96MV8 337 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 TCP11L1Q9NUJ3 509 aa16.4■□□□□ 0.22
CLK3-204ENST00000483723 STK36Q9NRP7 1315 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 F8W031 263 aaPredicted RBP16.39■□□□□ 0.21
CLK3-204ENST00000483723 POLR3DP05423 398 aaPredicted RBP16.39■□□□□ 0.21
CLK3-204ENST00000483723 FERMT3Q86UX7 667 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 FANCBQ8NB91 859 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 DYNLL2Q96FJ2 89 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 MYL10Q9BUA6 226 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 ECM29Q5VYK3 1845 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 CCDC196A0A1B0GTZ2 297 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 PSDA5PKW4 1024 aaPredicted RBP16.39■□□□□ 0.21
CLK3-204ENST00000483723 YDJCA8MPS7 323 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 PPIP5K2O43314 1243 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 WDHD1O75717 1129 aaPredicted RBP16.39■□□□□ 0.21
CLK3-204ENST00000483723 MBD3O95983 291 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 POLD1P28340 1107 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 CRKP46108 304 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 RTN1Q16799 776 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 SOGA3Q5TF21 947 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 C16orf86Q6ZW13 317 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 FBXO18Q8NFZ0 1043 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 SGIP1Q9BQI5 828 aa16.39■□□□□ 0.21
CLK3-204ENST00000483723 ATF5Q9Y2D1 282 aaPredicted RBP16.39■□□□□ 0.21
CLK3-204ENST00000483723 BRCA1P38398 1863 aaKnown RBP16.39■□□□□ 0.21
CLK3-204ENST00000483723 MYH15Q9Y2K3 1946 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 IARSP41252 1262 aaKnown RBP16.38■□□□□ 0.21
CLK3-204ENST00000483723 SCNN1DP51172 638 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 TROAPQ12815 778 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 CSPP1Q1MSJ5 1256 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 CCDC178Q5BJE1 867 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 FAM47AQ5JRC9 791 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 IFIT1BQ5T764 474 aaKnown RBP16.38■□□□□ 0.21
CLK3-204ENST00000483723 RCSD1Q6JBY9 416 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 CDC42EP5Q6NZY7 148 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 NBPF11Q86T75 865 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 DGKHQ86XP1 1220 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 ZNF287Q9HBT7 754 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 GDPD2Q9HCC8 539 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 USP40Q9NVE5 1235 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 PIM2Q9P1W9 311 aa16.38■□□□□ 0.21
CLK3-204ENST00000483723 SAP30BPQ9UHR5 308 aaKnown RBP16.38■□□□□ 0.21
CLK3-204ENST00000483723 ADAMTSL1Q8N6G6 1762 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms