RNA–Protein interactions for RNA: ENST00000463060.5

COL6A1-202, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 5

Gene COL6A1, Length 863 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-202ENST00000463060 VEGFAP15692 232 aaPredicted RBP17.02■□□□□ 0.32
COL6A1-202ENST00000463060 TNFAIP1Q13829 316 aa17.02■□□□□ 0.32
COL6A1-202ENST00000463060 C16orf86Q6ZW13 317 aa17.02■□□□□ 0.32
COL6A1-202ENST00000463060 APOBEC3FQ8IUX4 373 aaKnown RBP17.02■□□□□ 0.32
COL6A1-202ENST00000463060 FOXP4Q8IVH2 680 aaPredicted RBP17.02■□□□□ 0.32
COL6A1-202ENST00000463060 DYNLL2Q96FJ2 89 aa17.02■□□□□ 0.32
COL6A1-202ENST00000463060 NEK1Q96PY6 1258 aa17.02■□□□□ 0.32
COL6A1-202ENST00000463060 TMEM39BQ9GZU3 492 aa17.02■□□□□ 0.32
COL6A1-202ENST00000463060 GGA3Q9NZ52 723 aa17.02■□□□□ 0.32
COL6A1-202ENST00000463060 PI4KBQ9UBF8 816 aa17.02■□□□□ 0.32
COL6A1-202ENST00000463060 POLR2AP24928 1970 aaKnown RBP17.02■□□□□ 0.31
COL6A1-202ENST00000463060 TNNI2P48788 182 aa17.01■□□□□ 0.31
COL6A1-202ENST00000463060 EXOSC10Q01780 885 aaKnown RBP17.01■□□□□ 0.31
COL6A1-202ENST00000463060 SLC4A8Q2Y0W8 1093 aa17.01■□□□□ 0.31
COL6A1-202ENST00000463060 PNMA8AQ86V59 439 aaPredicted RBP17.01■□□□□ 0.31
COL6A1-202ENST00000463060 CDAN1Q8IWY9 1227 aa17.01■□□□□ 0.31
COL6A1-202ENST00000463060 JAKMIP1Q96N16 626 aaKnown RBP17.01■□□□□ 0.31
COL6A1-202ENST00000463060 DEFB129Q9H1M3 183 aa17.01■□□□□ 0.31
COL6A1-202ENST00000463060 DNAJC18Q9H819 358 aa17.01■□□□□ 0.31
COL6A1-202ENST00000463060 RRAGCQ9HB90 399 aa17.01■□□□□ 0.31
COL6A1-202ENST00000463060 SCAF8Q9UPN6 1271 aaKnown RBP17.01■□□□□ 0.31
COL6A1-202ENST00000463060 NEDD4P46934 1319 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 TBC1D12O60347 775 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 PSMA5P28066 241 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 CDK8P49336 464 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 RABEP1Q15276 862 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 MFSD6Q6ZSS7 791 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 AMOTL1Q8IY63 956 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 MB21D2Q8IYB1 491 aaPredicted RBP17■□□□□ 0.31
COL6A1-202ENST00000463060 RNF41Q9H4P4 317 aaPredicted RBP17■□□□□ 0.31
COL6A1-202ENST00000463060 SERPINB13Q9UIV8 391 aa17■□□□□ 0.31
COL6A1-202ENST00000463060 HLA-DOAP06340 250 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 SLC3A2P08195 630 aaKnown RBP16.99■□□□□ 0.31
COL6A1-202ENST00000463060 HMGB1P09429 215 aaKnown RBP16.99■□□□□ 0.31
COL6A1-202ENST00000463060 SLURP2P0DP57 97 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 CPA1P15085 419 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 RASA1P20936 1047 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 NT5C2P49902 561 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 TATDN1Q6P1N9 297 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 RUFY3Q7L099 469 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 SLC44A5Q8NCS7 719 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 IL27Q8NEV9 243 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 NCOA7Q8NI08 942 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 TTC14Q96N46 770 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 ALDH8A1Q9H2A2 487 aaPredicted RBP16.99■□□□□ 0.31
COL6A1-202ENST00000463060 CNNM2Q9H8M5 875 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 ZSWIM5Q9P217 1185 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 SWAP70Q9UH65 585 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 RBM19Q9Y4C8 960 aaKnown RBP16.99■□□□□ 0.31
COL6A1-202ENST00000463060 PPP2R3BQ9Y5P8 575 aa16.99■□□□□ 0.31
COL6A1-202ENST00000463060 POTEIP0CG38 1075 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 POTEJP0CG39 1038 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 CASTP20810 708 aaKnown RBP16.98■□□□□ 0.31
COL6A1-202ENST00000463060 RPS6KB1P23443 525 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 SHMT1P34896 483 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 ANTXR2P58335 489 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 PDE4BQ07343 736 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 CYB5R4Q7L1T6 521 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 DHX32Q7L7V1 743 aaKnown RBP16.98■□□□□ 0.31
COL6A1-202ENST00000463060 ZSCAN29Q8IWY8 852 aaPredicted RBP16.98■□□□□ 0.31
COL6A1-202ENST00000463060 CSRNP1Q96S65 589 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 UPF3BQ9BZI7 483 aaKnown RBP16.98■□□□□ 0.31
COL6A1-202ENST00000463060 KRT23Q9C075 422 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 NMRK2Q9NPI5 230 aa16.98■□□□□ 0.31
COL6A1-202ENST00000463060 HERC5Q9UII4 1024 aaKnown RBP16.98■□□□□ 0.31
COL6A1-202ENST00000463060 WDR19Q8NEZ3 1342 aa16.97■□□□□ 0.31
COL6A1-202ENST00000463060 B4E1Z4 1266 aa16.97■□□□□ 0.31
COL6A1-202ENST00000463060 PRDM1O75626 825 aa16.97■□□□□ 0.31
COL6A1-202ENST00000463060 BLOC1S2Q6QNY1 142 aa16.97■□□□□ 0.31
COL6A1-202ENST00000463060 STK11IPQ8N1F8 1099 aa16.97■□□□□ 0.31
COL6A1-202ENST00000463060 FBXL16Q8N461 479 aa16.97■□□□□ 0.31
COL6A1-202ENST00000463060 DCPSQ96C86 337 aaKnown RBP16.97■□□□□ 0.31
COL6A1-202ENST00000463060 CYP46A1Q9Y6A2 500 aa16.97■□□□□ 0.31
COL6A1-202ENST00000463060 KDM4AO75164 1064 aa16.96■□□□□ 0.31
COL6A1-202ENST00000463060 NEK4P51957 841 aa16.96■□□□□ 0.31
COL6A1-202ENST00000463060 TRDNQ13061 729 aa16.96■□□□□ 0.31
COL6A1-202ENST00000463060 NBPF12Q5TAG4 269 aaPredicted RBP16.96■□□□□ 0.31
COL6A1-202ENST00000463060 AGXT2Q9BYV1 514 aa16.96■□□□□ 0.31
COL6A1-202ENST00000463060 ZNF287Q9HBT7 754 aa16.96■□□□□ 0.31
COL6A1-202ENST00000463060 FAM196BA6NMK8 535 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 MCM5P33992 734 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 C1QTNF8P60827 252 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 RRP1BQ14684 758 aaKnown RBP16.95■□□□□ 0.3
COL6A1-202ENST00000463060 EAPPQ56P03 285 aaPredicted RBP16.95■□□□□ 0.3
COL6A1-202ENST00000463060 PRAMEF18Q5VWM3 479 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 DLK2Q6UY11 383 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 RALYLQ86SE5 291 aaKnown RBP16.95■□□□□ 0.3
COL6A1-202ENST00000463060 IGDCC4Q8TDY8 1250 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 ESR2Q92731 530 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 MTA3Q9BTC8 594 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.95■□□□□ 0.3
COL6A1-202ENST00000463060 MKNK2Q9HBH9 465 aa16.95■□□□□ 0.3
COL6A1-202ENST00000463060 PHF20L1A8MW92 1017 aa16.94■□□□□ 0.3
COL6A1-202ENST00000463060 ADM5C9JUS6 153 aa16.94■□□□□ 0.3
COL6A1-202ENST00000463060 PRC1O43663 620 aa16.94■□□□□ 0.3
COL6A1-202ENST00000463060 CD2BP2O95400 341 aaKnown RBP16.94■□□□□ 0.3
COL6A1-202ENST00000463060 NOVP48745 357 aa16.94■□□□□ 0.3
COL6A1-202ENST00000463060 CDC37L1Q7L3B6 337 aa16.94■□□□□ 0.3
COL6A1-202ENST00000463060 KRT26Q7Z3Y9 468 aa16.94■□□□□ 0.3
COL6A1-202ENST00000463060 SULF1Q8IWU6 871 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms