RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 MCM2P49736 904 aa27.2■■□□□ 1.94
CPSF4-204ENST00000436336 EXOSC10Q01780 885 aaKnown RBP27.2■■□□□ 1.94
CPSF4-204ENST00000436336 TCP10Q12799 353 aa27.2■■□□□ 1.94
CPSF4-204ENST00000436336 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.2■■□□□ 1.94
CPSF4-204ENST00000436336 B4E1Z4 1266 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 HLA-DOAP06340 250 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 TBC1D2Q9BYX2 928 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 TOMM22Q9NS69 142 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 WDR19Q8NEZ3 1342 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 ATRNL1Q5VV63 1379 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 DCAF8L1A6NGE4 600 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 ORC4O43929 436 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 EPS15P42566 896 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 NT5C2P49902 561 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 ZFPM1Q8IX07 1006 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 L3MBTL3Q96JM7 780 aaPredicted RBP27.19■■□□□ 1.94
CPSF4-204ENST00000436336 VEZTQ9HBM0 779 aa27.19■■□□□ 1.94
CPSF4-204ENST00000436336 GLTPD2A6NH11 291 aa27.18■■□□□ 1.94
CPSF4-204ENST00000436336 TCP10L2B9ZVM9 353 aa27.18■■□□□ 1.94
CPSF4-204ENST00000436336 RRP12Q5JTH9 1297 aaKnown RBP27.18■■□□□ 1.94
CPSF4-204ENST00000436336 FAM83AQ86UY5 434 aa27.18■■□□□ 1.94
CPSF4-204ENST00000436336 FAM151AQ8WW52 585 aa27.18■■□□□ 1.94
CPSF4-204ENST00000436336 IPO9Q96P70 1041 aaKnown RBP27.18■■□□□ 1.94
CPSF4-204ENST00000436336 ZNF287Q9HBT7 754 aa27.18■■□□□ 1.94
CPSF4-204ENST00000436336 AK2P54819 239 aa27.17■■□□□ 1.94
CPSF4-204ENST00000436336 C16orf86Q6ZW13 317 aa27.17■■□□□ 1.94
CPSF4-204ENST00000436336 ESR2Q92731 530 aa27.17■■□□□ 1.94
CPSF4-204ENST00000436336 DYNLL2Q96FJ2 89 aa27.17■■□□□ 1.94
CPSF4-204ENST00000436336 TCEANC2Q96MN5 208 aa27.17■■□□□ 1.94
CPSF4-204ENST00000436336 KDM4AO75164 1064 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 ANKRD1Q15327 319 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 EHD4Q9H223 541 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 ADARB2Q9NS39 739 aaKnown RBP27.16■■□□□ 1.94
CPSF4-204ENST00000436336 CNTNAP1P78357 1384 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 DDTLA6NHG4 134 aaPredicted RBP27.16■■□□□ 1.94
CPSF4-204ENST00000436336 PRC1O43663 620 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 TNNI2P48788 182 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 ZSCAN29Q8IWY8 852 aaPredicted RBP27.16■■□□□ 1.94
CPSF4-204ENST00000436336 TRPM4Q8TD43 1214 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 ZSWIM5Q9P217 1185 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 PI4KBQ9UBF8 816 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 SERPINB13Q9UIV8 391 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 TAOK2Q9UL54 1235 aa27.16■■□□□ 1.94
CPSF4-204ENST00000436336 WDR90Q96KV7 1748 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 K7ELQ4 463 aaPredicted RBP27.15■■□□□ 1.94
CPSF4-204ENST00000436336 PRDM1O75626 825 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 ANTXR2P58335 489 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 GABPAQ06546 454 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 TNFAIP1Q13829 316 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 Q6ZUG5 572 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 CYB5R4Q7L1T6 521 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 SH3BP5LQ7L8J4 393 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 CHST3Q7LGC8 479 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 FBXL16Q8N461 479 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 NKX2-3Q8TAU0 364 aa27.15■■□□□ 1.94
CPSF4-204ENST00000436336 AGXT2Q9BYV1 514 aa27.14■■□□□ 1.94
CPSF4-204ENST00000436336 MKNK2Q9HBH9 465 aa27.14■■□□□ 1.94
CPSF4-204ENST00000436336 HACL1Q9UJ83 578 aa27.14■■□□□ 1.94
CPSF4-204ENST00000436336 CDK8P49336 464 aa27.13■■□□□ 1.93
CPSF4-204ENST00000436336 FGD1P98174 961 aa27.13■■□□□ 1.93
CPSF4-204ENST00000436336 MTA3Q9BTC8 594 aa27.13■■□□□ 1.93
CPSF4-204ENST00000436336 SWAP70Q9UH65 585 aa27.13■■□□□ 1.93
CPSF4-204ENST00000436336 POLR2AP24928 1970 aaKnown RBP27.13■■□□□ 1.93
CPSF4-204ENST00000436336 RANBP6O60518 1105 aaKnown RBP27.13■■□□□ 1.93
CPSF4-204ENST00000436336 TOB2Q14106 344 aaPredicted RBP27.13■■□□□ 1.93
CPSF4-204ENST00000436336 TMEM87BQ96K49 555 aa27.13■■□□□ 1.93
CPSF4-204ENST00000436336 LRRC2Q9BYS8 371 aa27.13■■□□□ 1.93
CPSF4-204ENST00000436336 FOXP4Q8IVH2 680 aaPredicted RBP27.12■■□□□ 1.93
CPSF4-204ENST00000436336 SLC44A5Q8NCS7 719 aa27.12■■□□□ 1.93
CPSF4-204ENST00000436336 ASTN2O75129 1339 aaPredicted RBP27.11■■□□□ 1.93
CPSF4-204ENST00000436336 HIRAP54198 1017 aaPredicted RBP27.11■■□□□ 1.93
CPSF4-204ENST00000436336 ZNF444Q8N0Y2 327 aaPredicted RBP27.11■■□□□ 1.93
CPSF4-204ENST00000436336 DAXXQ9UER7 740 aaPredicted RBP27.11■■□□□ 1.93
CPSF4-204ENST00000436336 LIMCH1Q9UPQ0 1083 aa27.11■■□□□ 1.93
CPSF4-204ENST00000436336 NOL8Q76FK4 1167 aaKnown RBP27.1■■□□□ 1.93
CPSF4-204ENST00000436336 APOBEC3FQ8IUX4 373 aaKnown RBP27.1■■□□□ 1.93
CPSF4-204ENST00000436336 CRACR2BQ8N4Y2 399 aaPredicted RBP27.1■■□□□ 1.93
CPSF4-204ENST00000436336 CSRNP1Q96S65 589 aa27.1■■□□□ 1.93
CPSF4-204ENST00000436336 RASA1P20936 1047 aa27.1■■□□□ 1.93
CPSF4-204ENST00000436336 METTL16Q86W50 562 aaKnown RBP27.1■■□□□ 1.93
CPSF4-204ENST00000436336 TSPY2A6NKD2 308 aa27.09■■□□□ 1.93
CPSF4-204ENST00000436336 SART3Q15020 963 aaKnown RBP27.09■■□□□ 1.93
CPSF4-204ENST00000436336 ANGEL2Q5VTE6 544 aaKnown RBP27.09■■□□□ 1.93
CPSF4-204ENST00000436336 IQCA1Q86XH1 822 aa27.09■■□□□ 1.93
CPSF4-204ENST00000436336 BRF1Q92994 677 aa27.09■■□□□ 1.93
CPSF4-204ENST00000436336 TMEM39BQ9GZU3 492 aa27.09■■□□□ 1.93
CPSF4-204ENST00000436336 RASA3Q14644 834 aa27.08■■□□□ 1.93
CPSF4-204ENST00000436336 IGDCC4Q8TDY8 1250 aa27.08■■□□□ 1.93
CPSF4-204ENST00000436336 ZSCAN31Q96LW9 406 aaPredicted RBP27.08■■□□□ 1.93
CPSF4-204ENST00000436336 TRIM34Q9BYJ4 488 aa27.08■■□□□ 1.93
CPSF4-204ENST00000436336 PGAP2Q9UHJ9 254 aa27.08■■□□□ 1.93
CPSF4-204ENST00000436336 ANGEL1Q9UNK9 670 aaKnown RBP27.08■■□□□ 1.93
CPSF4-204ENST00000436336 PITPNM2Q9BZ72 1349 aa27.08■■□□□ 1.93
CPSF4-204ENST00000436336 IQCA1LA6NCM1 817 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 SH2B2O14492 632 aaPredicted RBP27.07■■□□□ 1.92
CPSF4-204ENST00000436336 IFIT3O14879 490 aaKnown RBP27.07■■□□□ 1.92
CPSF4-204ENST00000436336 USP50Q70EL3 339 aaPredicted RBP27.07■■□□□ 1.92
CPSF4-204ENST00000436336 TMX3Q96JJ7 454 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 UBAC1Q9BSL1 405 aa27.07■■□□□ 1.92
CPSF4-204ENST00000436336 HERC5Q9UII4 1024 aaKnown RBP27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms