RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 ARID5BQ14865 1188 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 ZNF827Q17R98 1081 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 KRT79Q5XKE5 535 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 NOSTRINQ8IVI9 506 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 SCLT1Q96NL6 688 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 TSPY3P0CV98 308 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 TSPY8P0CW00 308 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 ARHGAP25P42331 645 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 TTC38Q5R3I4 469 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 IFT20Q8IY31 132 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 FAM71BQ8TC56 605 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 FAM89AQ96GI7 184 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 COPRSQ9NQ92 184 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 TBX22Q9Y458 520 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 IRS4O14654 1257 aaPredicted RBP12.41□□□□□ -0.42
HPS4-202ENST00000398145 HPDP32754 393 aaPredicted RBP12.41□□□□□ -0.42
HPS4-202ENST00000398145 PPP2R5BQ15173 497 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 LINC00301Q8NCQ3 95 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 STAMQ92783 540 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 STMN4Q9H169 189 aaPredicted RBP12.41□□□□□ -0.42
HPS4-202ENST00000398145 TLDC2A0PJX2 215 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 UBE4AQ14139 1066 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 NAA30Q147X3 362 aaPredicted RBP12.41□□□□□ -0.42
HPS4-202ENST00000398145 SLFNL1Q499Z3 407 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 PLVAPQ9BX97 442 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 C6orf50Q9HD87 102 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 RASAL2Q9UJF2 1139 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 KIF4AO95239 1232 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 ACTN2P35609 894 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 PRPHP41219 470 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 ZAP70P43403 619 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 SIRT1Q96EB6 747 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 TTC14Q96N46 770 aa12.41□□□□□ -0.42
HPS4-202ENST00000398145 DBNLQ9UJU6 430 aaKnown RBP12.41□□□□□ -0.42
HPS4-202ENST00000398145 MAGEA1P43355 309 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 PDE4DQ08499 809 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 POLA2Q14181 598 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 EXOC4Q96A65 974 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 TLR7Q9NYK1 1049 aaKnown RBP12.4□□□□□ -0.42
HPS4-202ENST00000398145 ATP7BP35670 1465 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 STXBP4Q6ZWJ1 553 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 ZNF496Q96IT1 587 aaPredicted RBP12.4□□□□□ -0.42
HPS4-202ENST00000398145 CLIC6Q96NY7 704 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 HAUS4Q9H6D7 363 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 PIK3AP1Q6ZUJ8 805 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 PLA2G4DQ86XP0 818 aa12.4□□□□□ -0.42
HPS4-202ENST00000398145 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.4□□□□□ -0.422e-6■■■■■ 76
HPS4-202ENST00000398145 FGAP02671 866 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 GNA11P29992 359 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 HNRNPH2P55795 449 aaKnown RBP12.39□□□□□ -0.43
HPS4-202ENST00000398145 SPATA1Q5VX52 437 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 NELFBQ8WX92 580 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 NOX5Q96PH1 765 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 SELENOSQ9BQE4 189 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 CARMIL3Q8ND23 1372 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 TBCAO75347 108 aaKnown RBP12.39□□□□□ -0.43
HPS4-202ENST00000398145 KCNA6P17658 529 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 RBM5P52756 815 aaKnown RBP eCLIP12.39□□□□□ -0.43
HPS4-202ENST00000398145 TBC1D5Q92609 795 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 NCOA3Q9Y6Q9 1424 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 A0A1B0GUA9 196 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 SLF2Q8IX21 1173 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 CRACR2BQ8N4Y2 399 aaPredicted RBP12.39□□□□□ -0.43
HPS4-202ENST00000398145 PSMB7Q99436 277 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 ARMT1Q9H993 441 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 SAMD15Q9P1V8 674 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 RRP15Q9Y3B9 282 aaKnown RBP12.39□□□□□ -0.43
HPS4-202ENST00000398145 MYO5CQ9NQX4 1742 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 BTBD18B2RXH4 712 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 PAK2Q13177 524 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 TMEM132AQ24JP5 1023 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 KMT5BQ4FZB7 885 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 PARD6BQ9BYG5 372 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 SLC52A2Q9HAB3 445 aa12.39□□□□□ -0.43
HPS4-202ENST00000398145 KRT13P13646 458 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 HOOK3Q86VS8 718 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 ERMNQ8TAM6 284 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 BCAS4Q8TDM0 211 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 UBLCP1Q8WVY7 318 aaPredicted RBP12.38□□□□□ -0.43
HPS4-202ENST00000398145 LRRC45Q96CN5 670 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 PGBD1Q96JS3 809 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 CABS1Q96KC9 395 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 MORC2Q9Y6X9 1032 aaPredicted RBP12.38□□□□□ -0.43
HPS4-202ENST00000398145 CDK12Q9NYV4 1490 aaPredicted RBP12.38□□□□□ -0.43
HPS4-202ENST00000398145 CCDC144BQ3MJ40 725 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 RUFY4Q6ZNE9 571 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 CCDC84Q86UT8 332 aaPredicted RBP12.38□□□□□ -0.43
HPS4-202ENST00000398145 ZMYM6O95789 1325 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 IGSF1Q8N6C5 1336 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 PPP6R2O75170 966 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 CNNM4Q6P4Q7 775 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 CCDC26Q8TAB7 109 aa12.38□□□□□ -0.43
HPS4-202ENST00000398145 TRAF5O00463 557 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 ITGA6P23229 1130 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 GOLGA8FQ08AF8 430 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 GOLGA8DPQ0D2H9 430 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 CFAP221Q4G0U5 840 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 SV2BQ7L1I2 683 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 RSRC1Q96IZ7 334 aaKnown RBP12.37□□□□□ -0.43
HPS4-202ENST00000398145 EXOC5O00471 708 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms