RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 KRT12Q99456 494 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 ACTR5Q9H9F9 607 aaPredicted RBP16.9■□□□□ 0.3
COL5A1-201ENST00000371817 ANKIB1Q9P2G1 1089 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 CCDC159P0C7I6 412 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 ZGPATQ8N5A5 531 aaKnown RBP16.9■□□□□ 0.3
COL5A1-201ENST00000371817 IFIH1Q9BYX4 1025 aaKnown RBP16.9■□□□□ 0.3
COL5A1-201ENST00000371817 CECR2Q9BXF3 1484 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 TTC4O95801 387 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 NXNQ6DKJ4 435 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 FLOT1O75955 427 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 RAD51AP2Q09MP3 1159 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 CNNM4Q6P4Q7 775 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 STX10O60499 249 aa16.9■□□□□ 0.3
COL5A1-201ENST00000371817 STARD3NLO95772 234 aa16.89■□□□□ 0.3
COL5A1-201ENST00000371817 GNAQP50148 359 aa16.89■□□□□ 0.3
COL5A1-201ENST00000371817 EXOC4Q96A65 974 aa16.89■□□□□ 0.3
COL5A1-201ENST00000371817 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.3
COL5A1-201ENST00000371817 ANGPTL2Q9UKU9 493 aa16.89■□□□□ 0.3
COL5A1-201ENST00000371817 SERPINI2O75830 405 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 FNBP4Q8N3X1 1017 aaPredicted RBP16.89■□□□□ 0.29
COL5A1-201ENST00000371817 TSC1Q92574 1164 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 MMEL1Q495T6 779 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 LIN9Q5TKA1 542 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 ZNF215Q9UL58 517 aaPredicted RBP16.89■□□□□ 0.29
COL5A1-201ENST00000371817 TNFAIP3P21580 790 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 CCDC125Q86Z20 511 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 ZNF652Q9Y2D9 606 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 EEF1B2P24534 225 aaKnown RBP16.89■□□□□ 0.29
COL5A1-201ENST00000371817 NEK2P51955 445 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 ESR2Q92731 530 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 LRRC8CQ8TDW0 803 aa16.89■□□□□ 0.29
COL5A1-201ENST00000371817 TDRD9Q8NDG6 1382 aaKnown RBP16.89■□□□□ 0.29
COL5A1-201ENST00000371817 AK2P54819 239 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 SART1O43290 800 aaKnown RBP16.88■□□□□ 0.29
COL5A1-201ENST00000371817 RSBN1LQ6PCB5 846 aaPredicted RBP16.88■□□□□ 0.29
COL5A1-201ENST00000371817 MIS18AQ9NYP9 233 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 KRT79Q5XKE5 535 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 C6orf50Q9HD87 102 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 STX8Q9UNK0 236 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 NME8Q8N427 588 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 PSPC1Q8WXF1 523 aaKnown RBP16.88■□□□□ 0.29
COL5A1-201ENST00000371817 RABGGTAQ92696 567 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 CCDC169A6NNP5 214 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 BAG3O95817 575 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 KRT80Q6KB66 452 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 TEX11Q8IYF3 940 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 TYW1Q9NV66 732 aaKnown RBP16.88■□□□□ 0.29
COL5A1-201ENST00000371817 KCNA4P22459 653 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 MCMDC2Q4G0Z9 681 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 MAIP1Q8WWC4 291 aa16.88■□□□□ 0.29
COL5A1-201ENST00000371817 CEP19Q96LK0 163 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 EFHD1Q9BUP0 239 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 TRAF5O00463 557 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 MTX1Q13505 466 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 NBPF6Q5VWK0 638 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 NBPF4Q96M43 638 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 KIAA1107Q9UPP5 1409 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 PPP1R12AO14974 1030 aaPredicted RBP16.87■□□□□ 0.29
COL5A1-201ENST00000371817 TRPA1O75762 1119 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 CWF19L2Q2TBE0 894 aaKnown RBP16.87■□□□□ 0.29
COL5A1-201ENST00000371817 KRT9P35527 623 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 TRIM60Q495X7 471 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 MPHOSPH6Q99547 160 aaKnown RBP16.87■□□□□ 0.29
COL5A1-201ENST00000371817 F6X3S4 739 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 PSMD7P51665 324 aa16.87■□□□□ 0.29
COL5A1-201ENST00000371817 CCHCR1Q8TD31 782 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 NOP53Q9NZM5 478 aaKnown RBP16.86■□□□□ 0.29
COL5A1-201ENST00000371817 TMTC3Q6ZXV5 915 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 VPS37BQ9H9H4 285 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 THAP12O43422 761 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 SLC12A2P55011 1212 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 RRP36Q96EU6 259 aaKnown RBP16.86■□□□□ 0.29
COL5A1-201ENST00000371817 PRAM1Q96QH2 718 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 MYD88Q99836 296 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 CDK19Q9BWU1 502 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 NOP14P78316 857 aaKnown RBP16.86■□□□□ 0.29
COL5A1-201ENST00000371817 WWC3Q9ULE0 1092 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 AMOTL2Q9Y2J4 779 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 IQCDQ96DY2 449 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 CLSTN2Q9H4D0 955 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 NAPAP54920 295 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 IRX1P78414 480 aaPredicted RBP16.86■□□□□ 0.29
COL5A1-201ENST00000371817 PPP2R5CQ13362 524 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 WDR44Q5JSH3 913 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 ANKRD36BQ8N2N9 1353 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 BEND3Q5T5X7 828 aa16.86■□□□□ 0.29
COL5A1-201ENST00000371817 ZC3H18Q86VM9 953 aaKnown RBP16.86■□□□□ 0.29
COL5A1-201ENST00000371817 INTS9Q9NV88 658 aaKnown RBP16.86■□□□□ 0.29
COL5A1-201ENST00000371817 MAN1A1P33908 653 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 TRAF1Q13077 416 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 MLKLQ8NB16 471 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 KLHL29Q96CT2 875 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 IL9RQ01113 521 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 NBPF9Q3BBW0 867 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 TSPY3P0CV98 308 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 TSPY8P0CW00 308 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 MCM10Q7L590 875 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 PAK1Q13153 545 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 TCEANC2Q96MN5 208 aa16.85■□□□□ 0.29
COL5A1-201ENST00000371817 RTL9Q8NET4 1388 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms