RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GOLGA6L22H0YM25 854 aa18.13■□□□□ 0.49
LIMS1-202ENST00000338045 RCAN1P53805 252 aa18.13■□□□□ 0.49
LIMS1-202ENST00000338045 WTAPQ15007 396 aa18.13■□□□□ 0.49
LIMS1-202ENST00000338045 AMOTL1Q8IY63 956 aa18.13■□□□□ 0.49
LIMS1-202ENST00000338045 UBAC1Q9BSL1 405 aa18.13■□□□□ 0.49
LIMS1-202ENST00000338045 CD2APQ9Y5K6 639 aa18.13■□□□□ 0.49
LIMS1-202ENST00000338045 ERICH2A1L162 156 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 ZBTB43O43298 467 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 PRDM1O75626 825 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 APOBEC3HQ6NTF7 200 aaKnown RBP18.12■□□□□ 0.49
LIMS1-202ENST00000338045 ZDHHC15Q96MV8 337 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 ZKSCAN3Q9BRR0 538 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 PSME4Q14997 1843 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 TNKSO95271 1327 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 CCDC69A6NI79 296 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 RANBP6O60518 1105 aaKnown RBP18.12■□□□□ 0.49
LIMS1-202ENST00000338045 PTGER2P43116 358 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 METAP2P50579 478 aaKnown RBP eCLIP18.12■□□□□ 0.496e-8■■■■■ 30.3
LIMS1-202ENST00000338045 SCNN1DP51172 638 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 NFXL1Q6ZNB6 911 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 IQCA1Q86XH1 822 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 DDX11Q96FC9 970 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 ZSCAN10Q96SZ4 725 aaPredicted RBP18.12■□□□□ 0.49
LIMS1-202ENST00000338045 KIF3AQ9Y496 699 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 SLC12A7Q9Y666 1083 aa18.12■□□□□ 0.49
LIMS1-202ENST00000338045 CRKP46108 304 aa18.11■□□□□ 0.49
LIMS1-202ENST00000338045 PLCD1P51178 756 aa18.11■□□□□ 0.49
LIMS1-202ENST00000338045 DALRD3Q5D0E6 543 aaKnown RBP18.11■□□□□ 0.49
LIMS1-202ENST00000338045 MCTP1Q6DN14 999 aa18.11■□□□□ 0.49
LIMS1-202ENST00000338045 FAM184AQ8NB25 1140 aa18.11■□□□□ 0.49
LIMS1-202ENST00000338045 GOLGB1Q14789 3259 aaKnown RBP18.11■□□□□ 0.49
LIMS1-202ENST00000338045 VPS37CA5D8V6 355 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-202ENST00000338045 WDHD1O75717 1129 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-202ENST00000338045 POLR3DP05423 398 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-202ENST00000338045 FDPSP14324 419 aaKnown RBP18.1■□□□□ 0.49
LIMS1-202ENST00000338045 CDC37L1Q7L3B6 337 aa18.1■□□□□ 0.49
LIMS1-202ENST00000338045 KIAA0825Q8IV33 1275 aa18.1■□□□□ 0.49
LIMS1-202ENST00000338045 ENAHQ8N8S7 591 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-202ENST00000338045 ZNF277Q9NRM2 450 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-202ENST00000338045 FAM217BQ9NTX9 383 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-202ENST00000338045 ATP6V1DQ9Y5K8 247 aa18.1■□□□□ 0.49
LIMS1-202ENST00000338045 ADAMTSL1Q8N6G6 1762 aa18.1■□□□□ 0.49
LIMS1-202ENST00000338045 COL4A5P29400 1685 aa18.1■□□□□ 0.49
LIMS1-202ENST00000338045 CDC42EP5Q6NZY7 148 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 MICU3Q86XE3 530 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 RAB11FIP4Q86YS3 637 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 CHAMP1Q96JM3 812 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 SAP30BPQ9UHR5 308 aaKnown RBP18.09■□□□□ 0.49
LIMS1-202ENST00000338045 SERPINA10Q9UK55 444 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 CPLX1O14810 134 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 TRAK2O60296 914 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 CDC27P30260 824 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 SYNE3Q6ZMZ3 975 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 C16orf86Q6ZW13 317 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 LARGE2Q8N3Y3 721 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 DYNLL2Q96FJ2 89 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 USP40Q9NVE5 1235 aa18.09■□□□□ 0.49
LIMS1-202ENST00000338045 PSDA5PKW4 1024 aaPredicted RBP18.08■□□□□ 0.49
LIMS1-202ENST00000338045 GOLGA8AA7E2F4 631 aa18.08■□□□□ 0.49
LIMS1-202ENST00000338045 ADD1P35611 737 aaKnown RBP18.08■□□□□ 0.49
LIMS1-202ENST00000338045 NTRK3Q16288 839 aa18.08■□□□□ 0.49
LIMS1-202ENST00000338045 SLC4A8Q2Y0W8 1093 aa18.08■□□□□ 0.49
LIMS1-202ENST00000338045 MYL10Q9BUA6 226 aa18.08■□□□□ 0.49
LIMS1-202ENST00000338045 LMBRD1Q9NUN5 540 aa18.08■□□□□ 0.49
LIMS1-202ENST00000338045 MYO3BQ8WXR4 1341 aa18.08■□□□□ 0.48
LIMS1-202ENST00000338045 MYH1P12882 1939 aa18.08■□□□□ 0.48
LIMS1-202ENST00000338045 FER1L6Q2WGJ9 1857 aa18.08■□□□□ 0.48
LIMS1-202ENST00000338045 CDKL5O76039 1030 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 RXRAP19793 462 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 ZNF654Q8IZM8 581 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 RGS22Q8NE09 1264 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 ZNF287Q9HBT7 754 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 DDX4Q9NQI0 724 aaKnown RBP18.07■□□□□ 0.48
LIMS1-202ENST00000338045 TSPY2A6NKD2 308 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 VIL1P09327 827 aaKnown RBP18.07■□□□□ 0.48
LIMS1-202ENST00000338045 IARSP41252 1262 aaKnown RBP18.07■□□□□ 0.48
LIMS1-202ENST00000338045 PPP2R5BQ15173 497 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 FAM47AQ5JRC9 791 aa18.07■□□□□ 0.48
LIMS1-202ENST00000338045 IFIT1BQ5T764 474 aaKnown RBP18.07■□□□□ 0.48
LIMS1-202ENST00000338045 CPLX2Q6PUV4 134 aaKnown RBP18.07■□□□□ 0.48
LIMS1-202ENST00000338045 SKOR2Q2VWA4 1001 aaPredicted RBP18.06■□□□□ 0.48
LIMS1-202ENST00000338045 RSBN1LQ6PCB5 846 aaPredicted RBP18.06■□□□□ 0.48
LIMS1-202ENST00000338045 GMLQ99445 158 aa18.06■□□□□ 0.48
LIMS1-202ENST00000338045 MKNK2Q9HBH9 465 aa18.06■□□□□ 0.48
LIMS1-202ENST00000338045 TCP11L1Q9NUJ3 509 aa18.06■□□□□ 0.48
LIMS1-202ENST00000338045 ORC3Q9UBD5 711 aaPredicted RBP18.06■□□□□ 0.48
LIMS1-202ENST00000338045 ECM29Q5VYK3 1845 aa18.06■□□□□ 0.48
LIMS1-202ENST00000338045 RASA1P20936 1047 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 CDK8P49336 464 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 TFAP4Q01664 338 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 GABPAQ06546 454 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 RTN1Q16799 776 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 SLC44A5Q8NCS7 719 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 ANKS1AQ92625 1134 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 OSBPL5Q9H0X9 879 aaPredicted RBP18.05■□□□□ 0.48
LIMS1-202ENST00000338045 TAOK3Q9H2K8 898 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 PPP1R1BQ9UD71 204 aaPredicted RBP18.05■□□□□ 0.48
LIMS1-202ENST00000338045 ZNRF3Q9ULT6 936 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 CCDC196A0A1B0GTZ2 297 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 H3BQV1 296 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms