RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 GOLGA8HP0CJ92 632 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 RPS8P62241 208 aaKnown RBP11.42□□□□□ -0.58
CHD3-201ENST00000330494 ME3Q16798 604 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 NSMFQ6X4W1 530 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 LRRC47Q8N1G4 583 aaKnown RBP11.42□□□□□ -0.58
CHD3-201ENST00000330494 KDM2BQ8NHM5 1336 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 KIAA0232Q92628 1395 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 POTEB2H3BUK9 544 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 HOXB7P09629 217 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 NELFCDQ8IXH7 590 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 NIM1KQ8IY84 436 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 CCDC114Q96M63 670 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 BABAM1Q9NWV8 329 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 TTC37Q6PGP7 1564 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 PPARAQ07869 468 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 USPL1Q5W0Q7 1092 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 C17orf53Q8N3J3 647 aaPredicted RBP11.42□□□□□ -0.58
CHD3-201ENST00000330494 FERMT1Q9BQL6 677 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.42□□□□□ -0.58
CHD3-201ENST00000330494 MLH3Q9UHC1 1453 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 NOP56O00567 594 aaKnown RBP11.42□□□□□ -0.58
CHD3-201ENST00000330494 EPB41P11171 864 aaKnown RBP11.42□□□□□ -0.58
CHD3-201ENST00000330494 FAM160A1Q05DH4 1040 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 CALCRLQ16602 461 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 FNBP1Q96RU3 617 aa11.42□□□□□ -0.58
CHD3-201ENST00000330494 LUC7L2Q9Y383 392 aaKnown RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 PLEKHG3A1L390 1219 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 B4DLN1 442 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 CEP112Q8N8E3 955 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 EAF2Q96CJ1 260 aaPredicted RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 MAGI2Q86UL8 1455 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 GRIPAP1Q4V328 841 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 TRMT44Q8IYL2 757 aaKnown RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 SH2D4AQ9H788 454 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.41□□□□□ -0.58
CHD3-201ENST00000330494 TLR7Q9NYK1 1049 aaKnown RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 KRT86O43790 486 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 ZNF202O95125 648 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 MYL5Q02045 173 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 DLGAP5Q15398 846 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 SNX29Q8TEQ0 813 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 KDRP35968 1356 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 ARID4AP29374 1257 aaPredicted RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 MICALCLQ6ZW33 695 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 ZCCHC11Q5TAX3 1644 aaKnown RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 ADCY7P51828 1080 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 KRT83P78385 493 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 BEND3Q5T5X7 828 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 KRT40Q6A162 431 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 ZBTB38Q8NAP3 1195 aaPredicted RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 RDH13Q8NBN7 331 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 LEO1Q8WVC0 666 aaPredicted RBP11.41□□□□□ -0.58
CHD3-201ENST00000330494 CHAMP1Q96JM3 812 aa11.41□□□□□ -0.58
CHD3-201ENST00000330494 IGSF3O75054 1194 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 CRKLP46109 303 aaKnown RBP11.4□□□□□ -0.58
CHD3-201ENST00000330494 TBC1D8BQ0IIM8 1120 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 PNOCQ13519 176 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 RILPL1Q5EBL4 403 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 CCDC155Q8N6L0 562 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 SELENOSQ9BQE4 189 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 BLMP54132 1417 aaPredicted RBP11.4□□□□□ -0.58
CHD3-201ENST00000330494 ARHGEF35A5YM69 484 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 MRPS9P82933 396 aaKnown RBP11.4□□□□□ -0.58
CHD3-201ENST00000330494 CHRNDQ07001 517 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 BAG1Q99933 345 aaPredicted RBP11.4□□□□□ -0.58
CHD3-201ENST00000330494 SYNRGQ9UMZ2 1314 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 AKR1B15C9JRZ8 316 aaPredicted RBP11.4□□□□□ -0.58
CHD3-201ENST00000330494 GCNT3O95395 438 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 IGSF22Q8N9C0 903 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 PALD1Q9ULE6 856 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 CCDC63Q8NA47 563 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 TSNARE1Q96NA8 513 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 PAGR1Q9BTK6 254 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 PLVAPQ9BX97 442 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 C2CD5Q86YS7 1000 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 MYCT1Q8N699 235 aa11.4□□□□□ -0.58
CHD3-201ENST00000330494 ATP5JP18859 108 aa11.4□□□□□ -0.59
CHD3-201ENST00000330494 CCDC122Q5T0U0 273 aa11.4□□□□□ -0.59
CHD3-201ENST00000330494 MRRFQ96E11 262 aaKnown RBP11.4□□□□□ -0.59
CHD3-201ENST00000330494 QTRT2Q9H974 415 aaKnown RBP11.4□□□□□ -0.59
CHD3-201ENST00000330494 ARFGAP3Q9NP61 516 aa11.4□□□□□ -0.59
CHD3-201ENST00000330494 ALDH1B1P30837 517 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 PLCD1P51178 756 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 CSGALNACT2Q8N6G5 542 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 CEP83Q9Y592 693 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 TMEM94Q12767 1356 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 GPKOWQ92917 476 aaPredicted RBP eCLIP11.39□□□□□ -0.59
CHD3-201ENST00000330494 PSMB7Q99436 277 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 ZKSCAN5Q9Y2L8 839 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 ATP6V0A2Q9Y487 856 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 VGLL3A8MV65 326 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 PHKA1P46020 1223 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 TAF12Q16514 161 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 TPH2Q8IWU9 490 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 CBX8Q9HC52 389 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 TAB2Q9NYJ8 693 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 RASAL2Q9UJF2 1139 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 TARBP1Q13395 1621 aaKnown RBP11.39□□□□□ -0.59
CHD3-201ENST00000330494 LOC102724428A0A0B4J2F2 783 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 SIK1P57059 783 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms